Format

Send to:

Choose Destination
    • Showing Current items.

    Apobr apolipoprotein B receptor [ Mus musculus (house mouse) ]

    Gene ID: 171504, updated on 9-Jun-2019

    Summary

    Official Symbol
    Apobrprovided by MGI
    Official Full Name
    apolipoprotein B receptorprovided by MGI
    Primary source
    MGI:MGI:2176230
    See related
    Ensembl:ENSMUSG00000042759
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Apob48r; Apob-48r
    Expression
    Broad expression in placenta adult (RPKM 11.1), genital fat pad adult (RPKM 7.1) and 15 other tissues See more
    Orthologs

    Genomic context

    See Apobr in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (126584912..126589112)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (133728522..133732607)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit C Neighboring gene ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) Neighboring gene microRNA 7059 Neighboring gene interleukin 27 Neighboring gene predicted gene, 39086 Neighboring gene predicted gene, 39087 Neighboring gene nuclear protein transcription regulator 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    lipoprotein particle receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    very-low-density lipoprotein particle receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    very-low-density lipoprotein particle receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    cholesterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid transport IEA
    Inferred from Electronic Annotation
    more info
     
    steroid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    triglyceride metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    triglyceride metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    chylomicron IEA
    Inferred from Electronic Annotation
    more info
     
    low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    very-low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    apolipoprotein B receptor
    Names
    apolipoprotein B-100 receptor
    apolipoprotein B-48 receptor
    apolipoprotein B48 receptor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138310.1NP_612183.1  apolipoprotein B receptor

      See identical proteins and their annotated locations for NP_612183.1

      Status: PROVISIONAL

      Source sequence(s)
      AF141335
      Consensus CDS
      CCDS21834.1
      UniProtKB/Swiss-Prot
      Q8VBT6
      Related
      ENSMUSP00000042028.6, ENSMUST00000039522.7
      Conserved Domains (2) summary
      PTZ00121
      Location:32475
      PTZ00121; MAEBL; Provisional
      TIGR00927
      Location:503804
      2A1904; K+-dependent Na+/Ca+ exchanger

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      126584912..126589112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507399.3XP_006507462.1  apolipoprotein B receptor isoform X1

      Conserved Domains (1) summary
      PTZ00121
      Location:32475
      PTZ00121; MAEBL; Provisional
    2. XM_006507400.3XP_006507463.1  apolipoprotein B receptor isoform X2

      Conserved Domains (1) summary
      PTZ00121
      Location:38241
      PTZ00121; MAEBL; Provisional
    3. XM_006507401.3XP_006507464.1  apolipoprotein B receptor isoform X3

      Conserved Domains (1) summary
      PTZ00121
      Location:38241
      PTZ00121; MAEBL; Provisional
    Support Center