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    Kcnj15 potassium voltage-gated channel subfamily J member 15 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 170847, updated on 9-Oct-2018

    Summary

    Official Symbol
    Kcnj15provided by RGD
    Official Full Name
    potassium voltage-gated channel subfamily J member 15provided by RGD
    Primary source
    RGD:621662
    See related
    Ensembl:ENSRNOG00000001656
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Kir4.2
    Summary
    inwardly rectifying pottasium channel involved in charge balance in the membrane during bile secretion [RGD, Feb 2006]
    Expression
    Biased expression in Kidney (RPKM 447.5) and Lung (RPKM 52.8) See more
    Orthologs

    Genomic context

    See Kcnj15 in Genome Data Viewer
    Location:
    11q11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (35545185..35588517)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 11 NC_005110.3 (39131386..39174839)

    Chromosome 11 - NC_005110.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352313 Neighboring gene similar to heat shock protein 1, beta Neighboring gene uncharacterized LOC102550135 Neighboring gene ETS transcription factor ERG Neighboring gene ETS proto-oncogene 2, transcription factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    inward rectifier potassium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    inward rectifier potassium channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    potassium channel activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    potassium ion import across plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    potassium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    ATP-sensitive inward rectifier potassium channel 15
    Names
    inward rectifier K(+) channel Kir4.2
    potassium channel, inwardly rectifying subfamily J member 15
    potassium inwardly-rectifying channel, subfamily J, member 15

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133321.2NP_579855.1  ATP-sensitive inward rectifier potassium channel 15

      See identical proteins and their annotated locations for NP_579855.1

      Status: PROVISIONAL

      Source sequence(s)
      AY028455
      UniProtKB/Swiss-Prot
      Q91ZF1
      Related
      ENSRNOP00000002259.1, ENSRNOT00000002259.2
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005110.4 Reference Rnor_6.0 Primary Assembly

      Range
      35545185..35588517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006248131.3XP_006248193.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_006248193.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    2. XM_006248129.3XP_006248191.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_006248191.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    3. XM_006248132.3XP_006248194.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_006248194.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    4. XM_008768550.2XP_008766772.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_008766772.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    5. XM_008768551.2XP_008766773.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_008766773.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    6. XM_006248139.3XP_006248201.1  ATP-sensitive inward rectifier potassium channel 15 isoform X3

      See identical proteins and their annotated locations for XP_006248201.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:30356
      IRK; Inward rectifier potassium channel
    7. XM_006248128.3XP_006248190.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_006248190.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    8. XM_017597862.1XP_017453351.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      UniProtKB/Swiss-Prot
      Q91ZF1
    9. XM_017597861.1XP_017453350.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      UniProtKB/Swiss-Prot
      Q91ZF1
    10. XM_006248133.3XP_006248195.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_006248195.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    11. XM_008768552.2XP_008766774.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_008766774.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    12. XM_017597863.1XP_017453352.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      UniProtKB/Swiss-Prot
      Q91ZF1
    13. XM_006248137.3XP_006248199.1  ATP-sensitive inward rectifier potassium channel 15 isoform X2

      Conserved Domains (1) summary
      pfam01007
      Location:55381
      IRK; Inward rectifier potassium channel
    14. XM_008768553.2XP_008766775.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_008766775.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    15. XM_006248135.2XP_006248197.1  ATP-sensitive inward rectifier potassium channel 15 isoform X1

      See identical proteins and their annotated locations for XP_006248197.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:60386
      IRK; Inward rectifier potassium channel
    16. XM_006248141.3XP_006248203.1  ATP-sensitive inward rectifier potassium channel 15 isoform X3

      See identical proteins and their annotated locations for XP_006248203.1

      UniProtKB/Swiss-Prot
      Q91ZF1
      Conserved Domains (1) summary
      pfam01007
      Location:30356
      IRK; Inward rectifier potassium channel

    Alternate Rn_Celera

    Genomic

    1. AC_000079.1 Alternate Rn_Celera

      Range
      33838675..33855881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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