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    Lor loricrin [ Mus musculus (house mouse) ]

    Gene ID: 16939, updated on 17-Oct-2018

    Summary

    Official Symbol
    Lorprovided by MGI
    Official Full Name
    loricrinprovided by MGI
    Primary source
    MGI:MGI:96816
    See related
    Ensembl:ENSMUSG00000043165 Vega:OTTMUSG00000045087
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    S77319; AI036317
    Expression
    Restricted expression toward stomach adult (RPKM 762.9) See more
    Orthologs

    Genomic context

    See Lor in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (92080271..92083142, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (91884193..91887064, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH type containing 14 pseudogene Neighboring gene peptidoglycan recognition protein 3 Neighboring gene macrophage migration inhibitory factor, pseudogene 3 Neighboring gene proline rich 9 Neighboring gene late cornified envelope-like proline-rich 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of cytoskeleton IDA
    Inferred from Direct Assay
    more info
    PubMed 
    structural constituent of epidermis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    keratinization IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cornified envelope IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cornified envelope ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    cytoplasmic side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008508.2NP_032534.2  loricrin

      See identical proteins and their annotated locations for NP_032534.2

      Status: VALIDATED

      Source sequence(s)
      BC058223, CJ043484
      Consensus CDS
      CCDS17546.1
      UniProtKB/Swiss-Prot
      P18165
      Related
      ENSMUSP00000052128.6, OTTMUSP00000066120, ENSMUST00000058150.7, OTTMUST00000118473

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      92080271..92083142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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