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    Hoxc9 homeobox C9 [ Mus musculus (house mouse) ]

    Gene ID: 15427, updated on 7-Aug-2018

    Summary

    Official Symbol
    Hoxc9provided by MGI
    Official Full Name
    homeobox C9provided by MGI
    Primary source
    MGI:MGI:96199
    See related
    Ensembl:ENSMUSG00000036139 Vega:OTTMUSG00000037397
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hox-3.2
    Expression
    Biased expression in ovary adult (RPKM 7.9), mammary gland adult (RPKM 7.9) and 7 other tissues See more
    Orthologs

    Genomic context

    See Hoxc9 in Genome Data Viewer
    Location:
    15 F3; 15 58.04 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (102977032..102984444)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (102807463..102814875)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene homeobox C10 Neighboring gene microRNA 196a-2 Neighboring gene predicted gene, 36878 Neighboring gene predicted gene, 29852 Neighboring gene homeobox C8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    anterior/posterior pattern specification IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    anterior/posterior pattern specification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic skeletal system development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    embryonic skeletal system morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    aggresome ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    homeobox protein Hox-C9
    Names
    homeo box C9
    homeobox protein Hox-3.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008272.3NP_032298.1  homeobox protein Hox-C9

      See identical proteins and their annotated locations for NP_032298.1

      Status: PROVISIONAL

      Source sequence(s)
      AC124345
      Consensus CDS
      CCDS27893.1
      UniProtKB/Swiss-Prot
      P09633
      Related
      ENSMUSP00000001706.6, OTTMUSP00000053926, ENSMUST00000001706.6, OTTMUST00000096500
      Conserved Domains (2) summary
      smart00389
      Location:192241
      HOX; Homeodomain
      pfam04617
      Location:1179
      Hox9_act; Hox9 activation region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      102977032..102984444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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