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    TEX55 testis expressed 55 [ Homo sapiens (human) ]

    Gene ID: 152405, updated on 17-Jun-2019

    Summary

    Official Symbol
    TEX55provided by HGNC
    Official Full Name
    testis expressed 55provided by HGNC
    Primary source
    HGNC:HGNC:26553
    See related
    Ensembl:ENSG00000163424
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TSCPA; C3orf30
    Expression
    Restricted expression toward testis (RPKM 46.8) See more
    Orthologs

    Genomic context

    See TEX55 in Genome Data Viewer
    Location:
    3q13.32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (119146165..119151456)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (118864997..118879674)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374060 Neighboring gene uncharacterized LOC105374059 Neighboring gene IGSF11 antisense RNA 1 Neighboring gene immunoglobulin superfamily member 11 Neighboring gene B4GALT4 antisense RNA 1 Neighboring gene uroplakin 1B Neighboring gene beta-1,4-galactosyltransferase 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Potential readthrough

    Included gene: UPK1B

    Homology

    Clone Names

    • FLJ32859

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    testis-specific expressed protein 55
    Names
    Testis-specific conserved, cAMP-dependent type II PK anchoring protein
    uncharacterized protein C3orf30

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_152539.3NP_689752.2  testis-specific expressed protein 55

      See identical proteins and their annotated locations for NP_689752.2

      Status: VALIDATED

      Source sequence(s)
      AC083800, AK057421, DW009752
      Consensus CDS
      CCDS2984.1
      UniProtKB/Swiss-Prot
      Q96M34
      Related
      ENSP00000295622.1, ENST00000295622.6
      Conserved Domains (1) summary
      PRK12678
      Location:10205
      PRK12678; transcription termination factor Rho; Provisional

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

      Range
      119146165..119151456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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