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    Galnt4 polypeptide N-acetylgalactosaminyltransferase 4 [ Mus musculus (house mouse) ]

    Gene ID: 14426, updated on 23-May-2018

    Summary

    Official Symbol
    Galnt4provided by MGI
    Official Full Name
    polypeptide N-acetylgalactosaminyltransferase 4provided by MGI
    Primary source
    MGI:MGI:894692
    See related
    Ensembl:ENSMUSG00000090035 Vega:OTTMUSG00000032482
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AV011803
    Orthologs

    Genomic context

    See Galnt4 in Genome Data Viewer
    Location:
    10; 10 C3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (99108135..99113247)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (98570769..98575881)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34346 Neighboring gene ATPase, Ca++ transporting, plasma membrane 1 Neighboring gene POC1 centriolar protein B Neighboring gene predicted gene, 34574 Neighboring gene predicted gene, 34777

    Genomic regions, transcripts, and products

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    polypeptide N-acetylgalactosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring glycosyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase 4
    Names
    UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 4
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4
    galNAc-T4
    polypeptide GalNAc transferase 4
    pp-GaNTase 4
    ppGaNTase-T4
    protein-UDP acetylgalactosaminyltransferase 4
    NP_056552.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_015737.4NP_056552.1  polypeptide N-acetylgalactosaminyltransferase 4

      See identical proteins and their annotated locations for NP_056552.1

      Status: VALIDATED

      Source sequence(s)
      AK148036, AV080565, BP761617, BQ179479, CJ093518
      Consensus CDS
      CCDS48679.1
      UniProtKB/Swiss-Prot
      O08832
      Related
      ENSMUSP00000125315.2, OTTMUSP00000043070, ENSMUST00000161240.3, OTTMUST00000080800
      Conserved Domains (4) summary
      cd02510
      Location:138432
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      COG0463
      Location:133430
      WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
      cd00161
      Location:446576
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
      pfam00652
      Location:446574
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      99108135..99113247
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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