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    Ccr10 chemokine (C-C motif) receptor 10 [ Mus musculus (house mouse) ]

    Gene ID: 12777, updated on 18-Sep-2018

    Summary

    Official Symbol
    Ccr10provided by MGI
    Official Full Name
    chemokine (C-C motif) receptor 10provided by MGI
    Primary source
    MGI:MGI:1096320
    See related
    Ensembl:ENSMUSG00000044052 Vega:OTTMUSG00000002727
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gpr2; CCR-10; Cmkbr9; CC-CKR-10; C-C CKR-10
    Expression
    Broad expression in colon adult (RPKM 12.4), duodenum adult (RPKM 11.6) and 16 other tissues See more
    Orthologs

    Genomic context

    See Ccr10 in Genome Data Viewer
    Location:
    11 D; 11 64.34 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (101172998..101175443, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (101034312..101036757, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene tubulin, gamma 2 Neighboring gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 Neighboring gene contactin associated protein-like 1 Neighboring gene enhancer of zeste 1 polycomb repressive complex 2 subunit Neighboring gene receptor (calcitonin) activity modifying protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC151420

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    C-C chemokine binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    C-C chemokine receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    C-C chemokine receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    chemokine binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    chemokine receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    G protein-coupled receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    calcium-mediated signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cell chemotaxis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    chemokine-mediated signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chemotaxis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of cytosolic calcium ion concentration IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of cytosolic calcium ion concentration IDA
    Inferred from Direct Assay
    more info
    PubMed 
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    C-C chemokine receptor type 10
    Names
    G protein-coupled receptor 2
    chemokine C-C receptor 9

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007721.4NP_031747.2  C-C chemokine receptor type 10

      See identical proteins and their annotated locations for NP_031747.2

      Status: VALIDATED

      Source sequence(s)
      AK090044
      Consensus CDS
      CCDS25454.1
      UniProtKB/Swiss-Prot
      Q9JL21
      Related
      ENSMUSP00000062588.3, OTTMUSP00000002576, ENSMUST00000062759.3, OTTMUST00000005413
      Conserved Domains (1) summary
      pfam00001
      Location:58235
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      101172998..101175443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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