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    Mrps7 mitochondrial ribosomal protein S7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 113958, updated on 13-Aug-2019

    Summary

    Official Symbol
    Mrps7provided by RGD
    Official Full Name
    mitochondrial ribosomal protein S7provided by RGD
    Primary source
    RGD:1309164
    See related
    Ensembl:ENSRNOG00000003797
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Adrenal (RPKM 343.2), Heart (RPKM 341.7) and 9 other tissues See more
    Orthologs

    Genomic context

    See Mrps7 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (104155805..104158840)
    106 current Rn_Celera (GCF_000002265.2) 10 AC_000078.1 (99418132..99421278)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (104122364..104125399, complement)

    Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene small ubiquitin-like modifier 2 Neighboring gene nucleoporin 85 Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 3 Neighboring gene MIF4G domain containing Neighboring gene solute carrier family 25 member 19

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    mitochondrial translation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    ribosomal small subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    mitochondrial small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrial small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    mitochondrial small ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    28S ribosomal protein S7, mitochondrial
    Names
    MRP-S7
    S7mt
    mitchondrial ribosomal protein S7
    NP_001093941.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100471.1NP_001093941.1  28S ribosomal protein S7, mitochondrial

      See identical proteins and their annotated locations for NP_001093941.1

      Status: VALIDATED

      Source sequence(s)
      BC088232, BF284763
      UniProtKB/Swiss-Prot
      Q5I0K8
      Related
      ENSRNOP00000005089.5, ENSRNOT00000005089.6
      Conserved Domains (1) summary
      cd14870
      Location:35240
      uS7_Mitochondria_Mammalian; Mammalian Mitochondrial homolog of Ribosomal Protein S7

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

      Range
      104155805..104158840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000078.1 Alternate Rn_Celera

      Range
      99418132..99421278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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