Format

Send to:

Choose Destination
    • Showing Current items.

    Taf9 TATA-box binding protein associated factor 9 [ Mus musculus (house mouse) ]

    Gene ID: 108143, updated on 9-Sep-2018

    Summary

    Official Symbol
    Taf9provided by MGI
    Official Full Name
    TATA-box binding protein associated factor 9provided by MGI
    Primary source
    MGI:MGI:1888697
    See related
    Ensembl:ENSMUSG00000052293 Ensembl:ENSMUSG00000078941 Vega:OTTMUSG00000049400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Taf2g; TAFII31; TAFII32; AA673500; AU045423; 2310012M09Rik
    Expression
    Broad expression in testis adult (RPKM 265.3), CNS E14 (RPKM 68.0) and 18 other tissues See more
    Orthologs

    Genomic context

    See Taf9 in Genome Data Viewer
    Location:
    13; 13 D1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (100651343..100656060)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (101421298..101436368)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene MARVEL (membrane-associating) domain containing 2 Neighboring gene RAD17 checkpoint clamp loader component Neighboring gene adenylate kinase 6 Neighboring gene coiled-coil domain containing 125 Neighboring gene cyclin-dependent kinase 7 Neighboring gene mitochondrial ribosomal protein S36

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC117979

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    C2H2 zinc finger domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    activating transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to histone acetyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    contributes_to histone acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    p53 binding ISO
    Inferred from Sequence Orthology
    more info
     
    transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription regulatory region DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription regulatory region DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    box C/D snoRNP assembly ISO
    Inferred from Sequence Orthology
    more info
     
    histone H3 acetylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    histone H3 acetylation ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of proteasomal ubiquitin-dependent protein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of cell growth ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of response to cytokine stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    protein stabilization ISO
    Inferred from Sequence Orthology
    more info
     
    response to interleukin-1 ISO
    Inferred from Sequence Orthology
    more info
     
    transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    MLL1 complex ISO
    Inferred from Sequence Orthology
    more info
     
    PCAF complex ISO
    Inferred from Sequence Orthology
    more info
     
    SAGA complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    STAGA complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    pre-snoRNP complex ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor TFIID complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    transcription factor TFTC complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    transcription initiation factor TFIID subunit 9
    Names
    RNA polymerase II TBP-associated factor subunit G
    TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32 kDa
    transcription initiation factor TFIID 31 kDa subunit
    transcription initiation factor TFIID 32 kDa subunit
    NP_001015889.1
    NP_081415.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015889.2NP_001015889.1  transcription initiation factor TFIID subunit 9

      See identical proteins and their annotated locations for NP_001015889.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longer transcript. Variants 1 and 3 encode the same protein.
      Source sequence(s)
      BC096683, BQ839921, BY108476
      Consensus CDS
      CCDS26735.1
      UniProtKB/Swiss-Prot
      Q8VI33
      Related
      ENSMUSP00000132143.1, ENSMUST00000167256.7
      Conserved Domains (1) summary
      pfam02291
      Location:9129
      TFIID-31kDa; Transcription initiation factor IID, 31kD subunit
    2. NM_027139.5NP_081415.1  transcription initiation factor TFIID subunit 9

      See identical proteins and their annotated locations for NP_081415.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 3. Variants 1 and 3 encode the same protein.
      Source sequence(s)
      BC096683, BY108476
      Consensus CDS
      CCDS26735.1
      UniProtKB/Swiss-Prot
      Q8VI33
      Related
      ENSMUSP00000081772.6, ENSMUST00000084721.7
      Conserved Domains (1) summary
      pfam02291
      Location:9129
      TFIID-31kDa; Transcription initiation factor IID, 31kD subunit

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      100651343..100656060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center