Format

Send to:

Choose Destination
    • Showing Current items.

    AGER advanced glycosylation end-product specific receptor [ Ovis aries (sheep) ]

    Gene ID: 101111586, updated on 5-Dec-2017

    Summary

    Gene symbol
    AGER
    Gene description
    advanced glycosylation end-product specific receptor
    See related
    Ensembl:ENSOARG00000000355
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ovis aries
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
    Orthologs

    Genomic context

    See AGER in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current Oar_v4.0 (GCF_000298735.2) 20 NC_019477.2 (26248562..26252253)
    101 previous assembly Oar_v3.1 (GCF_000298735.1) 20 NC_019477.1 (26335913..26339341)

    Chromosome 20 - NC_019477.2Genomic Context describing neighboring genes Neighboring gene G protein signaling modulator 3 Neighboring gene PBX homeobox 2 Neighboring gene ring finger protein 5 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 1 Neighboring gene EGF like domain multiple 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sheep Tissue Atlas
    • Description: Sheep total RNA was extracted from embryonic and adult tissues
    • BioProject: PRJEB6169
    • Publication: PMID 24904168
    • Analysis date: Mon Jan 29 09:33:46 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General protein information

    Preferred Names
    advanced glycosylation end product-specific receptor

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Ovis aries Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oar_v4.0 Primary Assembly

    Genomic

    1. NC_019477.2 Reference Oar_v4.0 Primary Assembly

      Range
      26248562..26252253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004018916.3XP_004018965.1  advanced glycosylation end product-specific receptor isoform X2

      UniProtKB/TrEMBL
      W5NQA9
      Related
      ENSOARP00000000349
      Conserved Domains (4) summary
      smart00408
      Location:254309
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:247321
      IG_like; Immunoglobulin like
      pfam08205
      Location:116211
      C2-set_2; CD80-like C2-set immunoglobulin domain
      cl11960
      Location:24103
      Ig; Immunoglobulin domain
    2. XM_012100908.2XP_011956298.1  advanced glycosylation end product-specific receptor isoform X3

      Conserved Domains (4) summary
      smart00408
      Location:247302
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:240314
      IG_like; Immunoglobulin like
      pfam08205
      Location:116211
      C2-set_2; CD80-like C2-set immunoglobulin domain
      cl11960
      Location:24103
      Ig; Immunoglobulin domain
    3. XM_012100909.2XP_011956299.1  advanced glycosylation end product-specific receptor isoform X4

      Conserved Domains (3) summary
      smart00408
      Location:220275
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:213287
      IG_like; Immunoglobulin like
      pfam08205
      Location:99177
      C2-set_2; CD80-like C2-set immunoglobulin domain
    4. XM_004018915.3XP_004018964.1  advanced glycosylation end product-specific receptor isoform X1

      Conserved Domains (4) summary
      smart00408
      Location:243298
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:236310
      IG_like; Immunoglobulin like
      pfam08205
      Location:116211
      C2-set_2; CD80-like C2-set immunoglobulin domain
      cl11960
      Location:24103
      Ig; Immunoglobulin domain
    5. XM_012100910.1XP_011956300.1  advanced glycosylation end product-specific receptor isoform X5

      Conserved Domains (3) summary
      smart00408
      Location:193248
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:186260
      IG_like; Immunoglobulin like
      pfam08205
      Location:72150
      C2-set_2; CD80-like C2-set immunoglobulin domain

    Alternate Oori1

    Genomic

    1. NW_011943055.1 Alternate Oori1

      Range
      640672..644385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012163474.1XP_012018864.1  advanced glycosylation end product-specific receptor isoform X4

      Conserved Domains (3) summary
      smart00408
      Location:220275
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:213287
      IG_like; Immunoglobulin like
      pfam08205
      Location:99177
      C2-set_2; CD80-like C2-set immunoglobulin domain
    2. XM_012163472.2XP_012018862.1  advanced glycosylation end product-specific receptor isoform X3

      Conserved Domains (4) summary
      smart00408
      Location:254309
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:247321
      IG_like; Immunoglobulin like
      pfam00047
      Location:24110
      ig; Immunoglobulin domain
      pfam08205
      Location:123218
      C2-set_2; CD80-like C2-set immunoglobulin domain
    3. XM_012163471.2XP_012018861.1  advanced glycosylation end product-specific receptor isoform X2

      Conserved Domains (4) summary
      smart00408
      Location:261316
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:254328
      IG_like; Immunoglobulin like
      pfam00047
      Location:24110
      ig; Immunoglobulin domain
      pfam08205
      Location:123218
      C2-set_2; CD80-like C2-set immunoglobulin domain
    4. XM_012163473.2XP_012018863.1  advanced glycosylation end product-specific receptor isoform X1

      Conserved Domains (4) summary
      smart00408
      Location:250305
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:243317
      IG_like; Immunoglobulin like
      pfam00047
      Location:24110
      ig; Immunoglobulin domain
      pfam08205
      Location:123218
      C2-set_2; CD80-like C2-set immunoglobulin domain
    5. XM_012163476.2XP_012018866.1  advanced glycosylation end product-specific receptor isoform X5

      Conserved Domains (3) summary
      smart00408
      Location:193248
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:186260
      IG_like; Immunoglobulin like
      pfam08205
      Location:72150
      C2-set_2; CD80-like C2-set immunoglobulin domain
    Support Center