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    GPC5 glypican 5 [ Sus scrofa (pig) ]

    Gene ID: 100737621, updated on 2-Oct-2018

    Summary

    Gene symbol
    GPC5
    Gene description
    glypican 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Low expression observed in reference dataset See more
    Orthologs

    Genomic context

    See GPC5 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (60791000..62149911)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (66666602..67323189)

    Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene microRNA 19b-1 Neighboring gene microRNA 92a-1 Neighboring gene uncharacterized LOC106505326 Neighboring gene cytochrome c pseudogene Neighboring gene glypican 6 Neighboring gene dopachrome tautomerase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

      Range
      60791000..62149911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021065368.1XP_020921027.1  glypican-5 isoform X1

      Conserved Domains (1) summary
      pfam01153
      Location:20568
      Glypican
    2. XM_021065370.1XP_020921029.1  glypican-5 isoform X3

      Conserved Domains (1) summary
      pfam01153
      Location:20423
      Glypican
    3. XM_021065369.1XP_020921028.1  glypican-5 isoform X2

      Conserved Domains (1) summary
      pfam01153
      Location:20467
      Glypican
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