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    Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100723233, updated on 27-Jun-2018

    Summary

    Gene symbol
    Hps1
    Gene description
    HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
    See related
    Ensembl:ENSCPOG00000007029
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs

    Genomic context

    See Hps1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176418.1 (31989103..32013224, complement)

    NT_176418.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106025666 Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 2 Neighboring gene heparanase 2 (inactive) Neighboring gene V-type proton ATPase subunit E 1 pseudogene Neighboring gene small nucleolar RNA SNORA2/SNORA34 family

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NT_176418 Unplaced Scaffold Reference Cavpor3.0 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    Hermansky-Pudlak syndrome 1 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Cavia porcellus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cavpor3.0 Primary Assembly

    Genomic

    1. NT_176418.1 Reference Cavpor3.0 Primary Assembly

      Range
      31989103..32013224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013143489.2XP_012998943.1  Hermansky-Pudlak syndrome 1 protein isoform X1

      See identical proteins and their annotated locations for XP_012998943.1

      Related
      ENSCPOP00000006340.3, ENSCPOT00000007098.3
      Conserved Domains (1) summary
      pfam15388
      Location:257350
      FAM117; Protein Family FAM117
    2. XM_013143488.2XP_012998942.1  Hermansky-Pudlak syndrome 1 protein isoform X1

      See identical proteins and their annotated locations for XP_012998942.1

      Conserved Domains (1) summary
      pfam15388
      Location:257350
      FAM117; Protein Family FAM117
    3. XM_013143487.2XP_012998941.1  Hermansky-Pudlak syndrome 1 protein isoform X1

      See identical proteins and their annotated locations for XP_012998941.1

      Conserved Domains (1) summary
      pfam15388
      Location:257350
      FAM117; Protein Family FAM117
    4. XM_005008060.3XP_005008117.1  Hermansky-Pudlak syndrome 1 protein isoform X1

      See identical proteins and their annotated locations for XP_005008117.1

      Conserved Domains (1) summary
      pfam15388
      Location:257350
      FAM117; Protein Family FAM117
    5. XM_005008059.2XP_005008116.1  Hermansky-Pudlak syndrome 1 protein isoform X1

      See identical proteins and their annotated locations for XP_005008116.1

      Conserved Domains (1) summary
      pfam15388
      Location:257350
      FAM117; Protein Family FAM117
    6. XM_013143485.2XP_012998939.1  Hermansky-Pudlak syndrome 1 protein isoform X1

      See identical proteins and their annotated locations for XP_012998939.1

      Conserved Domains (1) summary
      pfam15388
      Location:257350
      FAM117; Protein Family FAM117
    7. XM_023561427.1XP_023417195.1  Hermansky-Pudlak syndrome 1 protein isoform X2

    8. XM_023561428.1XP_023417196.1  Hermansky-Pudlak syndrome 1 protein isoform X4

    9. XM_023561429.1XP_023417197.1  Hermansky-Pudlak syndrome 1 protein isoform X5

    10. XM_023561430.1XP_023417198.1  Hermansky-Pudlak syndrome 1 protein isoform X5

    11. XM_013143490.2XP_012998944.1  Hermansky-Pudlak syndrome 1 protein isoform X3

      Conserved Domains (1) summary
      pfam15388
      Location:257350
      FAM117; Protein Family FAM117
    12. XM_023561431.1XP_023417199.1  Hermansky-Pudlak syndrome 1 protein isoform X6

    RNA

    1. XR_001199251.2 RNA Sequence

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