Format

Send to:

Choose Destination
    • Showing Current items.

    COL18A1 collagen type XVIII alpha 1 chain [ Canis lupus familiaris (dog) ]

    Gene ID: 100687767, updated on 26-Sep-2018

    Summary

    Official Symbol
    COL18A1provided by VGNC
    Official Full Name
    collagen type XVIII alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:49781
    See related
    Ensembl:ENSCAFG00000011817
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See COL18A1 in Genome Data Viewer
    Location:
    chromosome: 31
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 31 NC_006613.3 (38915872..38957484)

    Chromosome 31 - NC_006613.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111093460 Neighboring gene protein O-fucosyltransferase 2 Neighboring gene solute carrier family 19 member 1 Neighboring gene poly(rC) binding protein 3

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006613.3 Chromosome 31 Reference CanFam3.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Protein digestion and absorption, organism-specific biosystem (from KEGG)
      Protein digestion and absorption, organism-specific biosystemProtein is a dietary component essential for nutritional homeostasis in humans. Normally, ingested protein undergoes a complex series of degradative processes following the action of gastric, pancrea...
    • Protein digestion and absorption, conserved biosystem (from KEGG)
      Protein digestion and absorption, conserved biosystemProtein is a dietary component essential for nutritional homeostasis in humans. Normally, ingested protein undergoes a complex series of degradative processes following the action of gastric, pancrea...

    General protein information

    Preferred Names
    LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
    Names
    collagen, type XVIII, alpha 1
    endostatin

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006613.3 Reference CanFam3.1 Primary Assembly

      Range
      38915872..38957484
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022413282.1XP_022268990.1  LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain

      Related
      ENSCAFP00000017439.4, ENSCAFT00000018820.5
      Conserved Domains (4) summary
      pfam01391
      Location:866915
      Collagen; Collagen triple helix repeat (20 copies)
      cd00247
      Location:13131472
      Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
      pfam06121
      Location:16197
      DUF959; Domain of Unknown Function (DUF959)
      cl22861
      Location:224412
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    Support Center