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    snf8 SNF8, ESCRT-II complex subunit [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100528684, updated on 13-Oct-2018

    Summary

    Gene symbol
    snf8
    Gene description
    SNF8, ESCRT-II complex subunit
    See related
    Ensembl:ENSIPUG00000000554
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs

    Genomic context

    See snf8 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current IpCoco_1.2 (GCF_001660625.1) 13 NC_030428.1 (15914139..15916343)

    Chromosome 13 - NC_030428.1Genomic Context describing neighboring genes Neighboring gene male-specific lethal 1 homolog Neighboring gene uncharacterized LOC108273561 Neighboring gene calcium binding and coiled-coil domain 2 Neighboring gene syntaxin-4-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030428.1 Chromosome 13 Reference IpCoco_1.2 Primary Assembly

    Pathways from BioSystems

    • ESCRT-II complex, organism-specific biosystem (from KEGG)
      ESCRT-II complex, organism-specific biosystemStructural complex; Genetic information processing; Protein processing
    • ESCRT-II complex, conserved biosystem (from KEGG)
      ESCRT-II complex, conserved biosystemStructural complex; Genetic information processing; Protein processing
    • Endocytosis, organism-specific biosystem (from KEGG)
      Endocytosis, organism-specific biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
    • Endocytosis, conserved biosystem (from KEGG)
      Endocytosis, conserved biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...

    General protein information

    Preferred Names
    vacuolar-sorting protein SNF8
    Names
    SNF8, ESCRT-II complex subunit, homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200954.1NP_001187883.1  vacuolar-sorting protein SNF8

      See identical proteins and their annotated locations for NP_001187883.1

      Status: PROVISIONAL

      Source sequence(s)
      GU589299
      UniProtKB/TrEMBL
      E3TG14
      Related
      ENSIPUP00000000821.1, ENSIPUT00000000878.1
      Conserved Domains (1) summary
      pfam04157
      Location:7225
      EAP30; EAP30/Vps36 family

    RefSeqs of Annotated Genomes: Ictalurus punctatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IpCoco_1.2 Primary Assembly

    Genomic

    1. NC_030428.1 Reference IpCoco_1.2 Primary Assembly

      Range
      15914139..15916343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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