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    FBXO6 F-box protein 6 [ Sus scrofa (pig) ]

    Gene ID: 100524148, updated on 2-Oct-2018

    Summary

    Gene symbol
    FBXO6
    Gene description
    F-box protein 6
    See related
    Ensembl:ENSSSCG00000003420
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 12.4), lung (RPKM 11.5) and 8 other tissues See more
    Orthologs

    Genomic context

    See FBXO6 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (71755335..71774264)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (65674308..65693217)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110261098 Neighboring gene F-box protein 2 Neighboring gene F-box protein 44 Neighboring gene mitotic arrest deficient 2 like 2 Neighboring gene dorsal inhibitory axon guidance protein Neighboring gene uncharacterized LOC102163957 Neighboring gene angiotensin II receptor associated protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Pathways from BioSystems

    • Protein processing in endoplasmic reticulum, organism-specific biosystem (from KEGG)
      Protein processing in endoplasmic reticulum, organism-specific biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...
    • Protein processing in endoplasmic reticulum, conserved biosystem (from KEGG)
      Protein processing in endoplasmic reticulum, conserved biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001244632.1NP_001231561.1  F-box only protein 6

      See identical proteins and their annotated locations for NP_001231561.1

      Status: VALIDATED

      Source sequence(s)
      AK352350
      UniProtKB/TrEMBL
      F1RF93
      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      71755335..71774264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021093352.1XP_020949011.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
    2. XM_013998960.2XP_013854414.1  F-box only protein 6 isoform X2

      UniProtKB/TrEMBL
      F1RF93
      Related
      ENSSSCP00000037303.1, ENSSSCT00000062668.1
      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like
    3. XM_021093350.1XP_020949009.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
    4. XM_021093351.1XP_020949010.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
    5. XM_021093349.1XP_020949008.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
    6. XM_021093358.1XP_020949017.1  F-box only protein 6 isoform X2

      Related
      ENSSSCP00000021988.2, ENSSSCT00000027874.2
      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like
    7. XM_005664982.3XP_005665039.1  F-box only protein 6 isoform X2

      See identical proteins and their annotated locations for XP_005665039.1

      UniProtKB/TrEMBL
      F1RF93
      Related
      ENSSSCP00000003707.2, ENSSSCT00000003794.3
      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like
    8. XM_021093353.1XP_020949012.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
    9. XM_005664985.3XP_005665042.1  F-box only protein 6 isoform X2

      See identical proteins and their annotated locations for XP_005665042.1

      UniProtKB/TrEMBL
      F1RF93
      Related
      ENSSSCP00000034200.1, ENSSSCT00000055511.1
      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like
    10. XM_021093356.1XP_020949015.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
    11. XM_021093361.1XP_020949020.1  F-box only protein 6 isoform X2

      Related
      ENSSSCP00000053026.1, ENSSSCT00000052678.1
      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like
    12. XM_005664983.3XP_005665040.1  F-box only protein 6 isoform X2

      See identical proteins and their annotated locations for XP_005665040.1

      UniProtKB/TrEMBL
      F1RF93
      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like
    13. XM_021093355.1XP_020949014.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
    14. XM_021093354.1XP_020949013.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
    15. XM_021093359.1XP_020949018.1  F-box only protein 6 isoform X2

      Related
      ENSSSCP00000026716.2, ENSSSCT00000030312.2
      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like
    16. XM_021093360.1XP_020949019.1  F-box only protein 6 isoform X2

      Conserved Domains (2) summary
      pfam04300
      Location:72250
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like; F-box-like
    17. XM_021093357.1XP_020949016.1  F-box only protein 6 isoform X1

      Conserved Domains (2) summary
      pfam04300
      Location:72213
      FBA; F-box associated region
      pfam12937
      Location:651
      F-box-like
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