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    CROT carnitine O-octanoyltransferase [ Sus scrofa (pig) ]

    Gene ID: 100521142, updated on 2-Oct-2018

    Summary

    Gene symbol
    CROT
    Gene description
    carnitine O-octanoyltransferase
    See related
    Ensembl:ENSSSCG00000015391
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in liver (RPKM 55.5), ovary (RPKM 36.0) and 8 other tissues See more
    Orthologs

    Genomic context

    See CROT in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (93263606..93308150, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (102743699..102788243, complement)

    Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100522818 Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 1 Neighboring gene ATP binding cassette subfamily B member 4 Neighboring gene transmembrane protein 243 Neighboring gene cyclin D binding myb like transcription factor 1 Neighboring gene uncharacterized LOC102166910

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Pathways from BioSystems

    General protein information

    Preferred Names
    peroxisomal carnitine O-octanoyltransferase
    NP_001230146.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243217.1NP_001230146.1  peroxisomal carnitine O-octanoyltransferase

      Status: VALIDATED

      Source sequence(s)
      AK343719
      UniProtKB/TrEMBL
      F1SBY8
      Related
      ENSSSCP00000016318.1, ENSSSCT00000016766.2
      Conserved Domains (1) summary
      pfam00755
      Location:20604
      Carn_acyltransf; Choline/Carnitine o-acyltransferase

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

      Range
      93263606..93308150 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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