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    ABCA6 ATP binding cassette subfamily A member 6 [ Sus scrofa (pig) ]

    Gene ID: 100520861, updated on 8-Sep-2017

    Summary

    Gene symbol
    ABCA6
    Gene description
    ATP binding cassette subfamily A member 6
    See related
    Ensembl:ENSSSCG00000017256
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in subcutaneous adipose (RPKM 35.7), liver (RPKM 30.8) and 6 other tissues See more
    Orthologs

    Genomic context

    See ABCA6 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (11225068..11369161)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (11721875..11850381, complement)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene vegetative cell wall protein gp1-like Neighboring gene ATP-binding cassette sub-family A member 10 Neighboring gene ATP-binding cassette sub-family A member 9 Neighboring gene ATP-binding cassette sub-family A member 8 Neighboring gene uncharacterized LOC110255980 Neighboring gene uncharacterized LOC110255981 Neighboring gene FAM20A, golgi associated secretory pathway pseudokinase

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • ABC transporters, organism-specific biosystem (from KEGG)
      ABC transporters, organism-specific biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
    • ABC transporters, conserved biosystem (from KEGG)
      ABC transporters, conserved biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...

    General protein information

    Preferred Names
    ATP-binding cassette sub-family A member 6
    Names
    ATP-binding cassette, sub-family A (ABC1), member 6

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      11225068..11369161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021068088.1XP_020923747.1  ATP-binding cassette sub-family A member 6 isoform X3

      Related
      ENSSSCP00000025996.2, ENSSSCT00000031470.2
      Conserved Domains (2) summary
      cd03263
      Location:479702
      ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
      cl28181
      Location:1171487
      AAA; ATPases associated with a variety of cellular activities
    2. XM_021068081.1XP_020923740.1  ATP-binding cassette sub-family A member 6 isoform X1

      Conserved Domains (1) summary
      cl28181
      Location:1171639
      AAA; ATPases associated with a variety of cellular activities
    3. XM_021068083.1XP_020923742.1  ATP-binding cassette sub-family A member 6 isoform X1

      Conserved Domains (1) summary
      cl28181
      Location:1171639
      AAA; ATPases associated with a variety of cellular activities
    4. XM_021068080.1XP_020923739.1  ATP-binding cassette sub-family A member 6 isoform X1

      Conserved Domains (1) summary
      cl28181
      Location:1171639
      AAA; ATPases associated with a variety of cellular activities
    5. XM_021068086.1XP_020923745.1  ATP-binding cassette sub-family A member 6 isoform X2

      Conserved Domains (1) summary
      cl28181
      Location:1171597
      AAA; ATPases associated with a variety of cellular activities
    6. XM_021068087.1XP_020923746.1  ATP-binding cassette sub-family A member 6 isoform X2

      Conserved Domains (1) summary
      cl28181
      Location:1171597
      AAA; ATPases associated with a variety of cellular activities
    7. XM_021068085.1XP_020923744.1  ATP-binding cassette sub-family A member 6 isoform X2

      Related
      ENSSSCP00000018283.3, ENSSSCT00000018785.3
      Conserved Domains (1) summary
      cl28181
      Location:1171597
      AAA; ATPases associated with a variety of cellular activities
    8. XM_021068082.1XP_020923741.1  ATP-binding cassette sub-family A member 6 isoform X1

      Conserved Domains (1) summary
      cl28181
      Location:1171639
      AAA; ATPases associated with a variety of cellular activities
    9. XM_021068084.1XP_020923743.1  ATP-binding cassette sub-family A member 6 isoform X2

      Conserved Domains (1) summary
      cl28181
      Location:1171597
      AAA; ATPases associated with a variety of cellular activities
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