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    FBXL20 F-box and leucine rich repeat protein 20 [ Sus scrofa (pig) ]

    Gene ID: 100517553, updated on 2-Oct-2018

    Summary

    Gene symbol
    FBXL20
    Gene description
    F-box and leucine rich repeat protein 20
    See related
    Ensembl:ENSSSCG00000017506
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 6.0), kidney (RPKM 4.7) and 8 other tissues See more
    Orthologs

    Genomic context

    See FBXL20 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (22873395..22972677)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (23326855..23419458)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102168162 Neighboring gene cyclin dependent kinase 12 Neighboring gene mediator complex subunit 1 Neighboring gene transcription factor CP2-like protein 1 Neighboring gene SH3 and cysteine rich domain 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    F-box/LRR-repeat protein 20

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      22873395..22972677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013979813.2XP_013835267.1  F-box/LRR-repeat protein 20 isoform X3

      UniProtKB/TrEMBL
      F1RWL1
      Conserved Domains (3) summary
      cd09293
      Location:220394
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:119144
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:2870
      F-box-like; F-box-like
    2. XM_005653936.3XP_005653993.1  F-box/LRR-repeat protein 20 isoform X1

      See identical proteins and their annotated locations for XP_005653993.1

      UniProtKB/TrEMBL
      A0A287B793
      Related
      ENSSSCP00000052339.1, ENSSSCT00000051396.1
      Conserved Domains (3) summary
      sd00034
      Location:121146
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:3071
      F-box-like; F-box-like
      cl28166
      Location:222396
      AMN1; Antagonist of mitotic exit network protein 1
    3. XM_013979820.2XP_013835274.1  F-box/LRR-repeat protein 20 isoform X4

      Conserved Domains (3) summary
      sd00034
      Location:105130
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:1455
      F-box-like; F-box-like
      cl28166
      Location:206380
      AMN1; Antagonist of mitotic exit network protein 1
    4. XM_003482995.4XP_003483043.1  F-box/LRR-repeat protein 20 isoform X2

      See identical proteins and their annotated locations for XP_003483043.1

      Conserved Domains (3) summary
      sd00034
      Location:119144
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:2869
      F-box-like; F-box-like
      cl28166
      Location:220394
      AMN1; Antagonist of mitotic exit network protein 1
    5. XM_013979808.2XP_013835262.1  F-box/LRR-repeat protein 20 isoform X3

      UniProtKB/TrEMBL
      F1RWL1
      Related
      ENSSSCP00000018553.3, ENSSSCT00000019059.3
      Conserved Domains (3) summary
      cd09293
      Location:220394
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:119144
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:2870
      F-box-like; F-box-like
    6. XM_013979816.2XP_013835270.1  F-box/LRR-repeat protein 20 isoform X4

      Conserved Domains (3) summary
      sd00034
      Location:105130
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:1455
      F-box-like; F-box-like
      cl28166
      Location:206380
      AMN1; Antagonist of mitotic exit network protein 1

    RNA

    1. XR_002337138.1 RNA Sequence

    2. XR_002337140.1 RNA Sequence

    3. XR_002337139.1 RNA Sequence

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