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    G3BP1 G3BP stress granule assembly factor 1 [ Sus scrofa (pig) ]

    Gene ID: 100513766, updated on 2-Oct-2018

    Summary

    Gene symbol
    G3BP1
    Gene description
    G3BP stress granule assembly factor 1
    See related
    Ensembl:ENSSSCG00000035676
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 18.0), ovary (RPKM 13.8) and 8 other tissues See more
    Orthologs

    Genomic context

    See G3BP1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (71236025..71276111, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (77426673..77442846, complement)

    Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 pseudogene Neighboring gene iron-sulfur cluster assembly 1 homolog, mitochondrial pseudogene Neighboring gene glycine receptor alpha 1 Neighboring gene uncharacterized LOC100514500 Neighboring gene uncharacterized LOC110257252 Neighboring gene uncharacterized LOC110257254 Neighboring gene antioxidant 1 copper chaperone

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    General protein information

    Preferred Names
    ras GTPase-activating protein-binding protein 1
    NP_001192334.1
    XP_020932208.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205405.1NP_001192334.1  ras GTPase-activating protein-binding protein 1

      Status: VALIDATED

      Source sequence(s)
      AK236301, AK239805, BP154290, EW589034, EW635927
      UniProtKB/TrEMBL
      A0A286ZTN5
      Related
      ENSSSCP00000018094.3, ENSSSCT00000018595.3
      Conserved Domains (3) summary
      pfam06390
      Location:211319
      NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
      cd00780
      Location:7135
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      cd12463
      Location:336415
      RRM_G3BP1; RNA recognition motif found in ras GTPase-activating protein-binding protein 1 (G3BP1) and similar proteins

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

      Range
      71236025..71276111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021076549.1XP_020932208.1  ras GTPase-activating protein-binding protein 1 isoform X1

      Related
      ENSSSCP00000034840.1, ENSSSCT00000046088.1
      Conserved Domains (3) summary
      pfam06390
      Location:211319
      NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
      cd00780
      Location:7135
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      cd12463
      Location:336415
      RRM_G3BP1; RNA recognition motif found in ras GTPase-activating protein-binding protein 1 (G3BP1) and similar proteins

    RNA

    1. XR_002339497.1 RNA Sequence

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