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    SNAP23 synaptosome associated protein 23 [ Sus scrofa (pig) ]

    Gene ID: 100512755, updated on 2-Oct-2018

    Summary

    Gene symbol
    SNAP23
    Gene description
    synaptosome associated protein 23
    See related
    Ensembl:ENSSSCG00000038735
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 43.7), lung (RPKM 40.2) and 8 other tissues See more
    Orthologs

    Genomic context

    See SNAP23 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (128849465..128888972, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (143742362..143781715, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene HAUS augmin like complex subunit 2 Neighboring gene leucine rich repeat containing 57 Neighboring gene zinc finger protein 106 Neighboring gene calpain 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Pathways from BioSystems

    General protein information

    Preferred Names
    synaptosomal-associated protein 23
    Names
    synaptosomal-associated protein, 23kDa

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001244718.1NP_001231647.1  synaptosomal-associated protein 23

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK230671
      Related
      ENSSSCP00000050427.1, ENSSSCT00000045675.1
      Conserved Domains (3) summary
      cd15884
      Location:149207
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:86147
      SNAP-25; SNAP-25 family
    2. NM_001244719.1NP_001231648.1  synaptosomal-associated protein 23

      See identical proteins and their annotated locations for NP_001231648.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AY609458
      UniProtKB/TrEMBL
      A0A287B2U6
      Related
      ENSSSCP00000051497.1, ENSSSCT00000048710.1
      Conserved Domains (3) summary
      cd15884
      Location:149207
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:86147
      SNAP-25; SNAP-25 family

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      128849465..128888972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013993108.2XP_013848562.1  synaptosomal-associated protein 23 isoform X1

      UniProtKB/TrEMBL
      A0A287AHK8
      Related
      ENSSSCP00000043345.1, ENSSSCT00000037285.1
      Conserved Domains (3) summary
      cd15884
      Location:160218
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:100158
      SNAP-25; SNAP-25 family
    2. XM_013993112.2XP_013848566.1  synaptosomal-associated protein 23 isoform X1

      UniProtKB/TrEMBL
      A0A287AHK8
      Conserved Domains (3) summary
      cd15884
      Location:160218
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:100158
      SNAP-25; SNAP-25 family
    3. XM_013993111.2XP_013848565.1  synaptosomal-associated protein 23 isoform X1

      UniProtKB/TrEMBL
      A0A287AHK8
      Conserved Domains (3) summary
      cd15884
      Location:160218
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:100158
      SNAP-25; SNAP-25 family
    4. XM_021070075.1XP_020925734.1  synaptosomal-associated protein 23 isoform X2

      Related
      ENSSSCP00000055712.1, ENSSSCT00000046474.1
      Conserved Domains (3) summary
      cd15884
      Location:149207
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:86147
      SNAP-25; SNAP-25 family
    5. XM_013993110.2XP_013848564.1  synaptosomal-associated protein 23 isoform X1

      UniProtKB/TrEMBL
      A0A287AHK8
      Conserved Domains (3) summary
      cd15884
      Location:160218
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:100158
      SNAP-25; SNAP-25 family
    6. XM_021069852.1XP_020925511.1  synaptosomal-associated protein 23 isoform X1

      Conserved Domains (3) summary
      cd15884
      Location:160218
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:100158
      SNAP-25; SNAP-25 family
    7. XM_013993109.2XP_013848563.1  synaptosomal-associated protein 23 isoform X1

      UniProtKB/TrEMBL
      A0A287AHK8
      Conserved Domains (3) summary
      cd15884
      Location:160218
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:100158
      SNAP-25; SNAP-25 family
    8. XM_005659700.3XP_005659757.1  synaptosomal-associated protein 23 isoform X2

      See identical proteins and their annotated locations for XP_005659757.1

      UniProtKB/TrEMBL
      A0A287B2U6
      Conserved Domains (3) summary
      cd15884
      Location:149207
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:86147
      SNAP-25; SNAP-25 family
    9. XM_021070141.1XP_020925800.1  synaptosomal-associated protein 23 isoform X2

      Related
      ENSSSCP00000031818.1, ENSSSCT00000037345.1
      Conserved Domains (3) summary
      cd15884
      Location:149207
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:86147
      SNAP-25; SNAP-25 family
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