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    tp53bp1 tumor protein p53 binding protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100490124, updated on 20-Jun-2018

    Summary

    Symbol
    tp53bp1provided by Xenbase
    Full Name
    tumor protein p53 binding protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1010615
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See tp53bp1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (97095787..97146189, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668234.1 (23300289..23350694, complement)

    Chromosome 3 - NC_030679.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein mgc145330 Neighboring gene tubulin gamma complex associated protein 4 Neighboring gene microtubule associated protein 1A Neighboring gene diphosphoinositol pentakisphosphate kinase 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • NOD-like receptor signaling pathway, organism-specific biosystem (from KEGG)
      NOD-like receptor signaling pathway, organism-specific biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...
    • NOD-like receptor signaling pathway, conserved biosystem (from KEGG)
      NOD-like receptor signaling pathway, conserved biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...

    General gene information

    Homology

    General protein information

    Preferred Names
    tumor suppressor p53-binding protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030679.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      97095787..97146189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018092452.1XP_017947941.1  tumor suppressor p53-binding protein 1 isoform X5

    2. XM_004912633.3XP_004912690.1  tumor suppressor p53-binding protein 1 isoform X3

      Conserved Domains (2) summary
      smart00292
      Location:20772162
      BRCT; breast cancer carboxy-terminal domain
      cl02573
      Location:16961814
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    3. XM_018092451.1XP_017947940.1  tumor suppressor p53-binding protein 1 isoform X4

    4. XM_004912632.3XP_004912689.1  tumor suppressor p53-binding protein 1 isoform X2

      Conserved Domains (2) summary
      smart00292
      Location:20772162
      BRCT; breast cancer carboxy-terminal domain
      cl02573
      Location:16961814
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    5. XM_002932245.4XP_002932291.2  tumor suppressor p53-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_002932291.2

      Conserved Domains (2) summary
      smart00292
      Location:20782163
      BRCT; breast cancer carboxy-terminal domain
      cl02573
      Location:16971815
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    6. XM_004912628.3XP_004912685.1  tumor suppressor p53-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_004912685.1

      Conserved Domains (2) summary
      smart00292
      Location:20782163
      BRCT; breast cancer carboxy-terminal domain
      cl02573
      Location:16971815
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    7. XM_018092453.1XP_017947942.1  tumor suppressor p53-binding protein 1 isoform X6

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