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    SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100454019, updated on 9-Oct-2018

    Summary

    Gene symbol
    SMARCAL1
    Gene description
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
    Locus tag
    CR201_G0040555
    See related
    Ensembl:ENSPPYG00000013155
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs

    Genomic context

    See SMARCAL1 in Genome Data Viewer
    Location:
    chromosome: 2B
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Susie_PABv2 (GCF_002880775.1) 2B NC_036905.1 (103433479..103503587)
    102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 2B NC_012593.1 (108185913..108261166)

    Chromosome 2B - NC_036905.1Genomic Context describing neighboring genes Neighboring gene X-ray repair cross complementing 5 Neighboring gene membrane associated ring-CH-type finger 4 Neighboring gene ribosomal protein L37a Neighboring gene proteasome subunit beta type-3 pseudogene

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Susie_PABv2 Primary Assembly

    Genomic

    1. NC_036905.1 Reference Susie_PABv2 Primary Assembly

      Range
      103433479..103503587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002812831.2XP_002812877.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      Conserved Domains (3) summary
      COG0553
      Location:417889
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      pfam07443
      Location:248301
      HARP; HepA-related protein (HARP)
      pfam15759
      Location:85326
      TMEM108; TMEM108 family
    2. XM_009238078.2XP_009236353.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X2

      Conserved Domains (3) summary
      COG0553
      Location:417867
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      pfam07443
      Location:248301
      HARP; HepA-related protein (HARP)
      pfam15759
      Location:85326
      TMEM108; TMEM108 family
    3. XM_024243183.1XP_024098951.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      Conserved Domains (3) summary
      COG0553
      Location:417889
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      pfam07443
      Location:248301
      HARP; HepA-related protein (HARP)
      pfam15759
      Location:85326
      TMEM108; TMEM108 family
    4. XM_002812830.3XP_002812876.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      Conserved Domains (3) summary
      COG0553
      Location:417889
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      pfam07443
      Location:248301
      HARP; HepA-related protein (HARP)
      pfam15759
      Location:85326
      TMEM108; TMEM108 family
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