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    STX18 syntaxin 18 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100441033, updated on 8-Oct-2018

    Summary

    Gene symbol
    STX18
    Gene description
    syntaxin 18
    Locus tag
    CR201_G0036156
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs

    Genomic context

    See STX18 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Susie_PABv2 (GCF_002880775.1) 4 NC_036907.1 (8459428..8588820)
    102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 4 NC_012595.1 (8908114..8926856)

    Chromosome 4 - NC_036907.1Genomic Context describing neighboring genes Neighboring gene msh homeobox 1 Neighboring gene uncharacterized LOC112133090 Neighboring gene 40S ribosomal protein S7-like Neighboring gene neuronal vesicle trafficking associated 1 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene Ly1 antibody reactive

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001131413.1NP_001124885.1  syntaxin-18

      See identical proteins and their annotated locations for NP_001124885.1

      Status: VALIDATED

      Source sequence(s)
      ABGA01241692, CR857618
      UniProtKB/Swiss-Prot
      Q5REB4
      Conserved Domains (2) summary
      cd15850
      Location:246304
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:496
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus

    RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Susie_PABv2 Primary Assembly

    Genomic

    1. NC_036907.1 Reference Susie_PABv2 Primary Assembly

      Range
      8459428..8588820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024245685.1XP_024101453.1  syntaxin-18 isoform X3

      Conserved Domains (2) summary
      cd15850
      Location:253302
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:496
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus
    2. XM_024245682.1XP_024101450.1  syntaxin-18 isoform X1

      Conserved Domains (3) summary
      cd15850
      Location:259317
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam05104
      Location:143227
      Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
      pfam10496
      Location:496
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus
    3. XM_024245683.1XP_024101451.1  syntaxin-18 isoform X2

      Conserved Domains (3) summary
      cd15850
      Location:246304
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam05104
      Location:143213
      Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
      pfam10496
      Location:496
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus
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