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    PDE1A phosphodiesterase 1A [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100414522, updated on 14-Jul-2017

    Summary

    Gene symbol
    PDE1A
    Gene description
    phosphodiesterase 1A
    See related
    Ensembl:ENSCJAG00000011397
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs

    Genomic context

    See PDE1A in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    104 current Callithrix jacchus-3.2 (GCF_000004665.1) 6 NC_013901.1 (36015942..36394911)

    Chromosome 6 - NC_013901.1Genomic Context describing neighboring genes Neighboring gene U1 small nuclear ribonucleoprotein C pseudogene Neighboring gene DnaJ heat shock protein family (Hsp40) member C10 Neighboring gene tctex1 domain-containing protein 2 pseudogene Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon pseudogene Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 1C Neighboring gene keratin, type I cytoskeletal 18 pseudogene

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_013901.1 Chromosome 6 Reference Callithrix jacchus-3.2

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Calcium signaling pathway, organism-specific biosystem (from KEGG)
      Calcium signaling pathway, organism-specific biosystemCa2+ that enters the cell from the outside is a principal source of signal Ca2+. Entry of Ca2+ is driven by the presence of a large electrochemical gradient across the plasma membrane. Cells use this...
    • Calcium signaling pathway, conserved biosystem (from KEGG)
      Calcium signaling pathway, conserved biosystemCa2+ that enters the cell from the outside is a principal source of signal Ca2+. Entry of Ca2+ is driven by the presence of a large electrochemical gradient across the plasma membrane. Cells use this...
    • Morphine addiction, organism-specific biosystem (from KEGG)
      Morphine addiction, organism-specific biosystemMorphine is an alkaloid from the plant extracts of opium poppy. Although morphine is highly effective for the treatment of pain, it is also known to be intensely addictive. We now know that the most ...
    • Morphine addiction, conserved biosystem (from KEGG)
      Morphine addiction, conserved biosystemMorphine is an alkaloid from the plant extracts of opium poppy. Although morphine is highly effective for the treatment of pain, it is also known to be intensely addictive. We now know that the most ...
    • Olfactory transduction, organism-specific biosystem (from KEGG)
      Olfactory transduction, organism-specific biosystemWithin the compact cilia of the olfactory receptor neurons (ORNs) a cascade of enzymatic activity transduces the binding of an odorant molecule to a receptor into an electrical signal that can be tra...
    • Olfactory transduction, conserved biosystem (from KEGG)
      Olfactory transduction, conserved biosystemWithin the compact cilia of the olfactory receptor neurons (ORNs) a cascade of enzymatic activity transduces the binding of an odorant molecule to a receptor into an electrical signal that can be tra...
    • Purine metabolism, organism-specific biosystem (from KEGG)
      Purine metabolism, organism-specific biosystem
      Purine metabolism
    • Purine metabolism, conserved biosystem (from KEGG)
      Purine metabolism, conserved biosystem
      Purine metabolism
    • Renin secretion, organism-specific biosystem (from KEGG)
      Renin secretion, organism-specific biosystemThe aspartyl-protease renin is the key regulator of the renin-angiotensin-aldosterone system, which is critically involved in extracellular fluid volume and blood pressure homeostasis of the body. R...
    • Renin secretion, conserved biosystem (from KEGG)
      Renin secretion, conserved biosystemThe aspartyl-protease renin is the key regulator of the renin-angiotensin-aldosterone system, which is critically involved in extracellular fluid volume and blood pressure homeostasis of the body. R...
    • Taste transduction, organism-specific biosystem (from KEGG)
      Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
    • Taste transduction, conserved biosystem (from KEGG)
      Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

    General protein information

    Preferred Names
    calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Callithrix jacchus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Callithrix jacchus-3.2

    Genomic

    1. NC_013901.1 Reference Callithrix jacchus-3.2

      Range
      36015942..36394911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008998594.2XP_008996842.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

      See identical proteins and their annotated locations for XP_008996842.1

      Related
      ENSCJAP00000021023.1, ENSCJAT00000022228.1
      Conserved Domains (2) summary
      pfam00233
      Location:218439
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
      pfam08499
      Location:77133
      PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    2. XM_008998593.2XP_008996841.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

      See identical proteins and their annotated locations for XP_008996841.1

      Conserved Domains (2) summary
      pfam00233
      Location:218439
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
      pfam08499
      Location:77133
      PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    3. XM_008998595.2XP_008996843.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

      See identical proteins and their annotated locations for XP_008996843.1

      Related
      ENSCJAP00000021012.2, ENSCJAT00000022217.2
      Conserved Domains (2) summary
      pfam00233
      Location:218439
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
      pfam08499
      Location:77133
      PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    4. XM_008998597.2XP_008996845.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2

      Conserved Domains (2) summary
      pfam00233
      Location:202423
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
      pfam08499
      Location:61117
      PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    5. XM_017973367.1XP_017828856.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X3

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