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    LOC100380783 aggrecan core protein [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100380783, updated on 10-May-2017

    Summary

    Gene symbol
    LOC100380783
    Gene description
    aggrecan core protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo

    Genomic context

    See LOC100380783 in Genome Data Viewer
    Location:
    chromosome: ssa11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ICSASG_v2 (GCF_000233375.1) ssa11 NC_027310.1 (30305558..30319459, complement)

    Chromosome ssa11 - NC_027310.1Genomic Context describing neighboring genes Neighboring gene Alpha-tectorin Neighboring gene hyaluronan and proteoglycan link protein 3-like Neighboring gene uncharacterized LOC106562427 Neighboring gene NAD(P) transhydrogenase, mitochondrial-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_027310.1 Chromosome ssa11 Reference ICSASG_v2 Primary Assembly

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ICSASG_v2 Primary Assembly

    Genomic

    1. NC_027310.1 Reference ICSASG_v2 Primary Assembly

      Range
      30305558..30319459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014127310.1XP_013982785.1  aggrecan core protein

      UniProtKB/TrEMBL
      A0A1S3KVZ6
      Conserved Domains (4) summary
      cd00033
      Location:929985
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
      cd03588
      Location:802925
      CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
      pfam00008
      Location:751780
      EGF; EGF-like domain
      cl02612
      Location:340
      Link_Domain; The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor ...
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