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    caln1 calneuron 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100379692, updated on 20-Jun-2018

    Summary

    Symbol
    caln1provided by Xenbase
    Full Name
    calneuron 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-953326
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See caln1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (94506491..94677030)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668233.1 (33685546..33856798)

    Chromosome 2 - NC_030678.1Genomic Context describing neighboring genes Neighboring gene SBDS ribosome assembly guanine nucleotide exchange factor Neighboring gene tRNA-yW synthesizing protein 1 homolog Neighboring gene polypeptide N-acetylgalactosaminyltransferase 17 Neighboring gene AUTS2, activator of transcription and developmental regulator

    Genomic regions, transcripts, and products

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030678.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      94506491..94677030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002935800.4XP_002935846.1  calcium-binding protein 8

      Conserved Domains (2) summary
      cd00051
      Location:41102
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:42102
      EF-hand_7; EF-hand domain pair
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