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    Ddit4l DNA-damage-inducible transcript 4-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100363484, updated on 13-Aug-2019

    Summary

    Official Symbol
    Ddit4lprovided by RGD
    Official Full Name
    DNA-damage-inducible transcript 4-likeprovided by RGD
    Primary source
    RGD:2322961
    See related
    Ensembl:ENSRNOG00000010047
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Muscle (RPKM 716.0), Heart (RPKM 122.6) and 2 other tissues See more
    Orthologs

    Genomic context

    See Ddit4l in Genome Data Viewer
    Location:
    2q44
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (242882219..242885088)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (261430156..261433647)

    Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350120 Neighboring gene endomucin Neighboring gene LRRGT00095 Neighboring gene uncharacterized LOC108350121 Neighboring gene uncharacterized LOC108350122

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    negative regulation of signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    DNA damage-inducible transcript 4-like protein
    Names
    DNA-damage-inducible transcript 4-like protein-like

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

      Range
      242882219..242885088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002729121.5XP_002729167.1  DNA damage-inducible transcript 4-like protein

      See identical proteins and their annotated locations for XP_002729167.1

      UniProtKB/Swiss-Prot
      Q8VD50
      Related
      ENSRNOP00000013661.2, ENSRNOT00000013661.4
      Conserved Domains (1) summary
      pfam07809
      Location:65183
      RTP801_C; RTP801 C-terminal region

    Alternate Rn_Celera

    Genomic

    1. AC_000070.1 Alternate Rn_Celera

      Range
      218297989..218300862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003753664.4XP_003753712.1  DNA damage-inducible transcript 4-like protein

      See identical proteins and their annotated locations for XP_003753712.1

      UniProtKB/Swiss-Prot
      Q8VD50
      Conserved Domains (1) summary
      pfam07809
      Location:65183
      RTP801_C; RTP801 C-terminal region
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