Format

Send to:

Choose Destination
    • Showing Current items.

    Dnaaf3 dynein, axonemal, assembly factor 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100359753, updated on 18-Apr-2019

    Summary

    Official Symbol
    Dnaaf3provided by RGD
    Official Full Name
    dynein, axonemal, assembly factor 3provided by RGD
    Primary source
    RGD:2323487
    See related
    Ensembl:ENSRNOG00000038600
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Heart (RPKM 380.0), Testes (RPKM 32.8) and 1 other tissue See more
    Orthologs

    Genomic context

    See Dnaaf3 in Genome Data Viewer
    Location:
    1q12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (72874131..72882867)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (75669343..75677205, complement)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, receptor type, H Neighboring gene uncharacterized LOC108349515 Neighboring gene synaptotagmin 5 Neighboring gene troponin I3, cardiac type Neighboring gene troponin T1, slow skeletal type Neighboring gene protein phosphatase 1, regulatory subunit 12C Neighboring gene EPS8-like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    axonemal dynein complex assembly IEA
    Inferred from Electronic Annotation
    more info
     
    axonemal dynein complex assembly ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    axonemal dynein complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    determination of left/right symmetry IEA
    Inferred from Electronic Annotation
    more info
     
    determination of left/right symmetry ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    heart development IEA
    Inferred from Electronic Annotation
    more info
     
    heart development ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    motile cilium assembly ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    motile cilium assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    dynein assembly factor 3, axonemal

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271115.1NP_001258044.1  dynein assembly factor 3, axonemal

      See identical proteins and their annotated locations for NP_001258044.1

      Status: PROVISIONAL

      Source sequence(s)
      AC097997
      UniProtKB/Swiss-Prot
      D3ZCM9
      Related
      ENSRNOP00000055687.2, ENSRNOT00000058900.4
      Conserved Domains (3) summary
      pfam14737
      Location:18122
      DUF4470; Domain of unknown function (DUF4470)
      pfam14740
      Location:154433
      DUF4471; Domain of unknown function (DUF4471)
      pfam15310
      Location:474554
      VAD1-2; Vitamin A-deficiency (VAD) rat model signalling

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      72874131..72882867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017588635.1XP_017444124.1  dynein assembly factor 3, axonemal isoform X1

    2. XM_008758882.2XP_008757104.1  dynein assembly factor 3, axonemal isoform X2

      Conserved Domains (2) summary
      pfam14737
      Location:18122
      DUF4470; Domain of unknown function (DUF4470)
      pfam14740
      Location:154433
      DUF4471; Domain of unknown function (DUF4471)

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      67828562..67836391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center