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    loxl4 lysyl oxidase-like 4 [ Danio rerio (zebrafish) ]

    Gene ID: 100320658, updated on 1-Aug-2018

    Summary

    Official Symbol
    loxl4provided by ZNC
    Official Full Name
    lysyl oxidase-like 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080722-19
    See related
    Ensembl:ENSDARG00000025089 Vega:OTTDARG00000029489
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Orthologs

    Genomic context

    See loxl4 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (40182487..40238920, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (40056597..40112781, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene golgin A7 family, member Bb Neighboring gene cartilage acidic protein 1b Neighboring gene zgc:123010 Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 2

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    copper ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEA
    Inferred from Electronic Annotation
    more info
     
    protein-lysine 6-oxidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    scavenger receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    collagen fibril organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    peptidyl-lysine oxidation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      40182487..40238920 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002664212.6XP_002664258.3  lysyl oxidase homolog 4

      UniProtKB/TrEMBL
      F1QJK9
      Related
      ENSDARP00000044962.7, OTTDARP00000032344, ENSDART00000044963.8
      Conserved Domains (3) summary
      smart00202
      Location:37138
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:43138
      SRCR; Scavenger receptor cysteine-rich domain
      pfam01186
      Location:587780
      Lysyl_oxidase; Lysyl oxidase
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