Format

Send to:

Choose Destination
    • Showing Current items.

    NPIPA5 nuclear pore complex interacting protein family member A5 [ Homo sapiens (human) ]

    Gene ID: 100288332, updated on 3-Apr-2018
    Official Symbol
    NPIPA5provided by HGNC
    Official Full Name
    nuclear pore complex interacting protein family member A5provided by HGNC
    Primary source
    HGNC:HGNC:41980
    See related
    Ensembl:ENSG00000183793 Vega:OTTHUMG00000166305
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NPIP
    Expression
    Ubiquitous expression in skin (RPKM 40.1), ovary (RPKM 32.3) and 25 other tissues See more
    Orthologs
    Location:
    16p13.11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 16 NC_000016.10 (15363613..15381467, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (15457481..15475344, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371097 Neighboring gene uncharacterized LOC107987241 Neighboring gene uncharacterized LOC105371103 Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene chromosome 16 open reading frame 45 Neighboring gene uncharacterized LOC105371102

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016
    Preferred Names
    nuclear pore complex-interacting protein family member A5

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_054723.1 RefSeqGene

      Range
      8185..22855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001277325.1NP_001264254.1  nuclear pore complex-interacting protein family member A5 isoform 1

      See identical proteins and their annotated locations for NP_001264254.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC137803, CB123100, EL734608
      Consensus CDS
      CCDS59264.1
      UniProtKB/Swiss-Prot
      E9PKD4
      Related
      ENSP00000433597.1, OTTHUMP00000232566, ENST00000360151.8, OTTHUMT00000389069
      Conserved Domains (1) summary
      pfam06409
      Location:22306
      NPIP; Nuclear pore complex interacting protein (NPIP)
    2. NM_001351200.1NP_001338129.1  nuclear pore complex-interacting protein family member A5 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate exon, resulting in a novel 3' coding region and 3' UTR compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AA770415, AC137803, CB053644, EL734608, KF175171, KF175172
      Related
      ENSP00000441072.1, ENST00000543801.5
      Conserved Domains (1) summary
      pfam06409
      Location:22214
      NPIP; Nuclear pore complex interacting protein (NPIP)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p12 Primary Assembly

      Range
      15363613..15381467 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024450132.1XP_024305900.1  nuclear pore complex-interacting protein family member A5 isoform X1

      Conserved Domains (2) summary
      pfam06409
      Location:41240
      NPIP; Nuclear pore complex interacting protein (NPIP)
      cl17068
      Location:141
      AFD_class_I; Adenylate forming domain, Class I superfamily
    2. XM_011522336.3XP_011520638.1  nuclear pore complex-interacting protein family member A5 isoform X3

      Conserved Domains (2) summary
      pfam06409
      Location:70262
      NPIP; Nuclear pore complex interacting protein (NPIP)
      cl17068
      Location:141
      AFD_class_I; Adenylate forming domain, Class I superfamily
    3. XM_011522329.3XP_011520631.1  nuclear pore complex-interacting protein family member A5 isoform X2

      See identical proteins and their annotated locations for XP_011520631.1

      Related
      ENSP00000435611.1, OTTHUMP00000232567, ENST00000534094.1
      Conserved Domains (2) summary
      pfam06409
      Location:70325
      NPIP; Nuclear pore complex interacting protein (NPIP)
      cl17068
      Location:141
      AFD_class_I; Adenylate forming domain, Class I superfamily
    4. XM_011522337.1XP_011520639.1  nuclear pore complex-interacting protein family member A5 isoform X4

      Conserved Domains (1) summary
      pfam06409
      Location:26245
      NPIP; Nuclear pore complex interacting protein (NPIP)

    RNA

    1. XR_932754.3 RNA Sequence

    2. XR_002957772.1 RNA Sequence

    Reference GRCh38.p12 ALT_REF_LOCI_1

    Genomic

    1. NT_187607.1 Reference GRCh38.p12 ALT_REF_LOCI_1

      Range
      1021570..1036245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center