Format

Send to:

Choose Destination
    • Showing Current items.

    CPNE1 copine 1 [ Sus scrofa (pig) ]

    Gene ID: 100233174, updated on 2-Oct-2018

    Summary

    Gene symbol
    CPNE1
    Gene description
    copine 1
    See related
    Ensembl:ENSSSCG00000007306
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 36.6), spleen (RPKM 27.0) and 8 other tissues See more
    Orthologs

    Genomic context

    See CPNE1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (38956489..38997189, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (44285465..44326165, complement)

    Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene fer-1-like protein 4 Neighboring gene sperm associated antigen 4 Neighboring gene RNA binding motif protein 12 Neighboring gene NFS1, cysteine desulfurase Neighboring gene reactive oxygen species modulator 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001143703.1NP_001137175.1  copine-1

      See identical proteins and their annotated locations for NP_001137175.1

      Status: PROVISIONAL

      Source sequence(s)
      FJ436394
      UniProtKB/TrEMBL
      B8XSK0
      Related
      ENSSSCP00000007780.1, ENSSSCT00000007994.2
      Conserved Domains (3) summary
      cd04047
      Location:138245
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:6124
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:251509
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

      Range
      38956489..38997189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center