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    NPAS2 neuronal PAS domain protein 2 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100223816, updated on 15-Feb-2018

    Summary

    Gene symbol
    NPAS2
    Gene description
    neuronal PAS domain protein 2
    See related
    Ensembl:ENSTGUG00000010003
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Orthologs

    Genomic context

    See NPAS2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Taeniopygia_guttata-3.2.4 (GCF_000151805.1) 1 NC_011462.1 (30326653..30436641, complement)

    Chromosome 1 - NC_011462.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 8 Neighboring gene ribosomal protein L31 Neighboring gene histone H2A-beta, sperm-like Neighboring gene phosducin like 3

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_011462.1 Chromosome 1 Reference Taeniopygia_guttata-3.2.4 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    neuronal PAS domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Taeniopygia_guttata-3.2.4 Primary Assembly

    Genomic

    1. NC_011462.1 Reference Taeniopygia_guttata-3.2.4 Primary Assembly

      Range
      30326653..30436641 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012569549.1XP_012425003.1  neuronal PAS domain-containing protein 2

      Conserved Domains (5) summary
      smart00091
      Location:84145
      PAS; PAS domain
      cd00083
      Location:761
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      cd00130
      Location:250348
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00989
      Location:84157
      PAS; PAS fold
      pfam14598
      Location:249352
      PAS_11; PAS domain
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