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    THBS2 thrombospondin 2 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100221289, updated on 15-Feb-2018

    Summary

    Gene symbol
    THBS2
    Gene description
    thrombospondin 2
    See related
    Ensembl:ENSTGUG00000009705
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Orthologs

    Genomic context

    See THBS2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Taeniopygia_guttata-3.2.4 (GCF_000151805.1) 3 NC_011466.1 (41355900..41384975, complement)

    Chromosome 3 - NC_011466.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase 6B1-like Neighboring gene SPARC related modular calcium binding 2 Neighboring gene WD repeat domain 27 Neighboring gene chromosome 3 open reading frame, human C6orf120 Neighboring gene PHD finger protein 10

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_011466.1 Chromosome 3 Reference Taeniopygia_guttata-3.2.4 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • ECM-receptor interaction, organism-specific biosystem (from KEGG)
      ECM-receptor interaction, organism-specific biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
    • ECM-receptor interaction, conserved biosystem (from KEGG)
      ECM-receptor interaction, conserved biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
    • Focal adhesion, organism-specific biosystem (from KEGG)
      Focal adhesion, organism-specific biosystemCell-matrix adhesions play essential roles in important biological processes including cell motility, cell proliferation, cell differentiation, regulation of gene expression and cell survival. At the...
    • Focal adhesion, conserved biosystem (from KEGG)
      Focal adhesion, conserved biosystemCell-matrix adhesions play essential roles in important biological processes including cell motility, cell proliferation, cell differentiation, regulation of gene expression and cell survival. At the...
    • Phagosome, organism-specific biosystem (from KEGG)
      Phagosome, organism-specific biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...
    • Phagosome, conserved biosystem (from KEGG)
      Phagosome, conserved biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...
    • Signal Transduction, organism-specific biosystem (from REACTOME)
      Signal Transduction, organism-specific biosystemcomputationally inferred pathway (not manually curated)
    • Signaling by PDGF, organism-specific biosystem (from REACTOME)
      Signaling by PDGF, organism-specific biosystemcomputationally inferred pathway (not manually curated)

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Taeniopygia_guttata-3.2.4 Primary Assembly

    Genomic

    1. NC_011466.1 Reference Taeniopygia_guttata-3.2.4 Primary Assembly

      Range
      41355900..41384975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012572494.1XP_012427948.1  thrombospondin-2

      Conserved Domains (10) summary
      smart00209
      Location:502554
      TSP1; Thrombospondin type 1 repeats
      sd00001
      Location:852889
      TSP3; TSP3 repeat_long [structural motif]
      sd00002
      Location:794828
      TSP3; TSP3 repeat_long [structural motif]
      sd00003
      Location:698733
      TSP3_1C; TSP3 repeat_1C [structural motif]
      pfam00090
      Location:390435
      TSP_1; Thrombospondin type 1 domain
      pfam00093
      Location:325379
      VWC; von Willebrand factor type C domain
      pfam02412
      Location:853889
      TSP_3; Thrombospondin type 3 repeat
      pfam05735
      Location:9791176
      TSP_C; Thrombospondin C-terminal region
      pfam12947
      Location:657696
      EGF_3; EGF domain
      cl22861
      Location:33221
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
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