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    pxn paxillin [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100216044, updated on 20-Jun-2018

    Summary

    Official Symbol
    pxnprovided by Xenbase
    Official Full Name
    paxillinprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-941407
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs

    Genomic context

    See pxn in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (143003063..143043784, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (56385836..56426557)

    Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene GCN1, eIF2 alpha kinase activator homolog Neighboring gene ribosomal protein, large, P0 Neighboring gene general transcription factor II-I repeat domain-containing protein 2-like Neighboring gene hydroxysteroid (11-beta) dehydrogenase 1-like, gene 2

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142032.1NP_001135504.1  paxillin

      See identical proteins and their annotated locations for NP_001135504.1

      Status: PROVISIONAL

      Source sequence(s)
      BC167913
      UniProtKB/TrEMBL
      B4F6K3
      Conserved Domains (5) summary
      cd09338
      Location:423475
      LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
      cd09407
      Location:364415
      LIM2_Paxillin; The second LIM domain of paxillin
      cd09411
      Location:482533
      LIM4_Paxillin; The fourth LIM domain of Paxillin
      cd09336
      Location:305357
      LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
      pfam03535
      Location:50234
      Paxillin; Paxillin family

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      143003063..143043784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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