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    nmd3 NMD3 homolog (S. cerevisiae) [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100195165, updated on 10-May-2017

    Summary

    Gene symbol
    nmd3
    Gene description
    NMD3 homolog (S. cerevisiae)
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo

    Genomic context

    See nmd3 in Genome Data Viewer
    Location:
    chromosome: ssa20
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ICSASG_v2 (GCF_000233375.1) ssa20 NC_027319.1 (53403864..53420050)

    Chromosome ssa20 - NC_027319.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 14 Neighboring gene protein phosphatase 1L-like Neighboring gene serine palmitoyltransferase small subunit B-like Neighboring gene inner ear-specific collagen-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_027319.1 Chromosome ssa20 Reference ICSASG_v2 Primary Assembly

    Pathways from BioSystems

    • RNA transport, organism-specific biosystem (from KEGG)
      RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • RNA transport, conserved biosystem (from KEGG)
      RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • Ribosome biogenesis in eukaryotes, organism-specific biosystem (from KEGG)
      Ribosome biogenesis in eukaryotes, organism-specific biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
    • Ribosome biogenesis in eukaryotes, conserved biosystem (from KEGG)
      Ribosome biogenesis in eukaryotes, conserved biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...

    General protein information

    Preferred Names
    60S ribosomal export protein NMD3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001140194.1NP_001133666.1  60S ribosomal export protein NMD3

      See identical proteins and their annotated locations for NP_001133666.1

      Status: PROVISIONAL

      Source sequence(s)
      BT045404
      UniProtKB/TrEMBL
      B5X2Y5
      Conserved Domains (2) summary
      COG1499
      Location:13388
      NMD3; NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
      pfam04981
      Location:17246
      NMD3; NMD3 family

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ICSASG_v2 Primary Assembly

    Genomic

    1. NC_027319.1 Reference ICSASG_v2 Primary Assembly

      Range
      53403864..53420050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014162550.1XP_014018025.1  60S ribosomal export protein NMD3 isoform X2

      UniProtKB/TrEMBL
      A0A1S3NS02
      Conserved Domains (2) summary
      COG1499
      Location:71446
      NMD3; NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
      pfam04981
      Location:75304
      NMD3; NMD3 family
    2. XM_014162551.1XP_014018026.1  60S ribosomal export protein NMD3 isoform X3

      UniProtKB/TrEMBL
      A0A1S3NRI1
      Conserved Domains (2) summary
      COG1499
      Location:13388
      NMD3; NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
      pfam04981
      Location:17246
      NMD3; NMD3 family
    3. XM_014162552.1XP_014018027.1  60S ribosomal export protein NMD3 isoform X3

      UniProtKB/TrEMBL
      A0A1S3NRI1
      Conserved Domains (2) summary
      COG1499
      Location:13388
      NMD3; NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
      pfam04981
      Location:17246
      NMD3; NMD3 family
    4. XM_014162549.1XP_014018024.1  60S ribosomal export protein NMD3 isoform X1

      UniProtKB/TrEMBL
      A0A1S3NRI7
      Conserved Domains (2) summary
      COG1499
      Location:78453
      NMD3; NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
      pfam04981
      Location:82311
      NMD3; NMD3 family
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