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    PDPK1 3-phosphoinositide dependent protein kinase 1 [ Sus scrofa (pig) ]

    Gene ID: 100192445, updated on 2-Oct-2018

    Summary

    Gene symbol
    PDPK1
    Gene description
    3-phosphoinositide dependent protein kinase 1
    See related
    Ensembl:ENSSSCG00000037719
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 13.3), kidney (RPKM 12.9) and 8 other tissues See more
    Orthologs

    Genomic context

    See PDPK1 in Genome Data Viewer
    Location:
    3; 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (39429928..39512623, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (42792968..42830074)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene serine protease 27 Neighboring gene potassium channel tetramerization domain containing 5 Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene amidohydrolase domain containing 2 Neighboring gene ATPase H+ transporting V0 subunit c

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

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    • Aldosterone-regulated sodium reabsorption, conserved biosystem (from KEGG)
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    • Apoptosis, organism-specific biosystem (from KEGG)
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    • Insulin resistance, organism-specific biosystem (from KEGG)
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    General protein information

    Preferred Names
    3-phosphoinositide-dependent protein kinase 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      39429928..39512623 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021086751.1XP_020942410.1  3-phosphoinositide-dependent protein kinase 1

      Related
      ENSSSCP00000046922.1, ENSSSCT00000046231.1
      Conserved Domains (2) summary
      cd01262
      Location:443549
      PH_PDK1; 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain
      cd05581
      Location:82344
      STKc_PDK1; Catalytic domain of the Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1
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