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    HPCAL1 hippocalcin like 1 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100173622, updated on 7-Oct-2018

    Summary

    Gene symbol
    HPCAL1
    Gene description
    hippocalcin like 1
    Locus tag
    CR201_G0022582
    See related
    Ensembl:ENSPPYG00000012655
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs

    Genomic context

    See HPCAL1 in Genome Data Viewer
    Location:
    chromosome: 2A
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Susie_PABv2 (GCF_002880775.1) 2A NC_036904.1 (98791346..98822152, complement)
    102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 2A NC_012592.1 (102261728..102292663, complement)

    Chromosome 2A - NC_036904.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103889900 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene ornithine decarboxylase 1 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene uncharacterized LOC112132039 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Clone Names

    • DKFZp459I0415

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001133153.1NP_001126625.1  hippocalcin-like protein 1

      See identical proteins and their annotated locations for NP_001126625.1

      Status: PROVISIONAL

      Source sequence(s)
      CR860666
      UniProtKB/Swiss-Prot
      Q5R632
      Related
      ENSPPYP00000014129, ENSPPYT00000014701
      Conserved Domains (3) summary
      COG5126
      Location:13179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
      cd00051
      Location:65126
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13833
      Location:3986
      EF-hand_8; EF-hand domain pair

    RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Susie_PABv2 Primary Assembly

    Genomic

    1. NC_036904.1 Reference Susie_PABv2 Primary Assembly

      Range
      98791346..98822152 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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