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    LRRTM4 leucine rich repeat transmembrane neuronal 4 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100173426, updated on 17-Mar-2018

    Summary

    Gene symbol
    LRRTM4
    Gene description
    leucine rich repeat transmembrane neuronal 4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs

    Genomic context

    See LRRTM4 in Genome Data Viewer
    Location:
    chromosome: 2A
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Susie_PABv2 (GCF_002880775.1) 2A NC_036904.1 (30981657..31773827)
    102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 2A NC_012592.1 (33072951..33078024)

    Chromosome 2A - NC_036904.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112132012 Neighboring gene uncharacterized LOC112132013 Neighboring gene 60S ribosomal protein L38 pseudogene Neighboring gene purine nucleoside phosphorylase-like Neighboring gene succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial pseudogene

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Clone Names

    • DKFZp459D155

    General protein information

    Preferred Names
    leucine-rich repeat transmembrane neuronal protein 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001132970.1NP_001126442.1  leucine-rich repeat transmembrane neuronal protein 4 precursor

      See identical proteins and their annotated locations for NP_001126442.1

      Status: PROVISIONAL

      Source sequence(s)
      CR860311
      UniProtKB/TrEMBL
      Q5R712
      Conserved Domains (5) summary
      cd00116
      Location:133316
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:303315
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:6486
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:110150
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:133193
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Susie_PABv2 Primary Assembly

    Genomic

    1. NC_036904.1 Reference Susie_PABv2 Primary Assembly

      Range
      30981657..31773827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024241952.1XP_024097720.1  leucine-rich repeat transmembrane neuronal protein 4 isoform X2

      Conserved Domains (3) summary
      sd00031
      Location:303315
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:6486
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:133193
      LRR_8; Leucine rich repeat
    2. XM_024241953.1XP_024097721.1  leucine-rich repeat transmembrane neuronal protein 4 isoform X2

      Conserved Domains (3) summary
      sd00031
      Location:303315
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:6486
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:133193
      LRR_8; Leucine rich repeat
    3. XM_024241951.1XP_024097719.1  leucine-rich repeat transmembrane neuronal protein 4 isoform X1

      Conserved Domains (3) summary
      sd00031
      Location:304316
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:6587
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:134194
      LRR_8; Leucine rich repeat
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