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    ZSCAN2 zinc finger and SCAN domain containing 2 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100172202, updated on 7-Oct-2018

    Summary

    Gene symbol
    ZSCAN2
    Gene description
    zinc finger and SCAN domain containing 2
    Locus tag
    CR201_G0043307
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    ZFP29; Zfp-29
    Orthologs

    Genomic context

    See ZSCAN2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Susie_PABv2 (GCF_002880775.1) 15 NC_036918.1 (65405848..65428302, complement)
    102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 15 Unlocalized Scaffold NW_002958673.1 (72082..95181)

    Chromosome 15 - NC_036918.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 73 Neighboring gene putative SCAN domain-containing protein SCAND2P Neighboring gene uncharacterized LOC100938654 Neighboring gene uncharacterized LOC112129038

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Clone Names

    • DKFZp469D0914

    General protein information

    Preferred Names
    zinc finger and SCAN domain-containing protein 2
    Names
    Zinc finger protein 29 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001131831.1NP_001125303.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for NP_001125303.1

      Status: PROVISIONAL

      Source sequence(s)
      CR858332
      UniProtKB/Swiss-Prot
      Q5RCD9
      Conserved Domains (5) summary
      COG5048
      Location:251631
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:395415
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:253275
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:72134
      SCAN; SCAN domain
      pfam13465
      Location:519544
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Susie_PABv2 Primary Assembly

    Genomic

    1. NC_036918.1 Reference Susie_PABv2 Primary Assembly

      Range
      65405848..65428302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009236313.2XP_009234588.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_009234588.1

      UniProtKB/TrEMBL
      K7ETE3
      Conserved Domains (3) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam02023
      Location:72134
      SCAN; SCAN domain
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