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    Vim vimentin [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100170760, updated on 27-Jun-2018

    Summary

    Gene symbol
    Vim
    Gene description
    vimentin
    See related
    Ensembl:ENSCPOG00000001054
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs

    Genomic context

    See Vim in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176299.1 (1613663..1621262, complement)

    NT_176299.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyacyl-CoA dehydratase 1 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene U6 spliceosomal RNA Neighboring gene tRNA aspartic acid methyltransferase 1

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NT_176299 Unplaced Scaffold Reference Cavpor3.0 Primary Assembly

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001173040.1NP_001166511.1  vimentin

      See identical proteins and their annotated locations for NP_001166511.1

      Status: PROVISIONAL

      Source sequence(s)
      EU827601
      UniProtKB/TrEMBL
      B5A9S3
      Related
      ENSCPOP00000000951.3, ENSCPOT00000001064.3
      Conserved Domains (3) summary
      pfam00038
      Location:100408
      Filament; Intermediate filament protein
      pfam04732
      Location:1299
      Filament_head; Intermediate filament head (DNA binding) region
      cl24005
      Location:288366
      DUF2570; Protein of unknown function (DUF2570)

    RefSeqs of Annotated Genomes: Cavia porcellus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cavpor3.0 Primary Assembly

    Genomic

    1. NT_176299.1 Reference Cavpor3.0 Primary Assembly

      Range
      1613663..1621262 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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