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    vdr vitamin D (1,25- dihydroxyvitamin D3) receptor [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 100169845, updated on 13-Oct-2018

    Summary

    Gene symbol
    vdr
    Gene description
    vitamin D (1,25- dihydroxyvitamin D3) receptor
    See related
    Ensembl:ENSORLG00000016402
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Also known as
    vdrbeta

    Genomic context

    See vdr in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (29684512..29713204, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (31372864..31401920, complement)

    Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene twist-related protein 2-like Neighboring gene histone deacetylase 7 Neighboring gene tensin-2 Neighboring gene transfer RNA glutamine (anticodon UUG)

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    vitamin D3 receptor
    Names
    vitamin D receptor beta

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128517.1NP_001121989.1  vitamin D3 receptor

      See identical proteins and their annotated locations for NP_001121989.1

      Status: PROVISIONAL

      Source sequence(s)
      EU403116
      UniProtKB/TrEMBL
      B2CCA1
      Conserved Domains (2) summary
      cd06955
      Location:16112
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019863.2 Reference ASM223467v1 Primary Assembly

      Range
      29684512..29713204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011475296.3XP_011473598.1  vitamin D3 receptor isoform X1

      See identical proteins and their annotated locations for XP_011473598.1

      UniProtKB/TrEMBL
      B2CCA1
      Related
      ENSORLP00000020536.2, ENSORLT00000020537.2
      Conserved Domains (2) summary
      cd06955
      Location:16112
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    RNA

    1. XR_908823.3 RNA Sequence

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