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    CADM3 cell adhesion molecule 3 [ Sus scrofa (pig) ]

    Gene ID: 100157273, updated on 2-Oct-2018

    Summary

    Gene symbol
    CADM3
    Gene description
    cell adhesion molecule 3
    See related
    Ensembl:ENSSSCG00000006415
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in mixtures (RPKM 6.8), spleen (RPKM 2.3) and 7 other tissues See more
    Orthologs

    Genomic context

    See CADM3 in Genome Data Viewer
    Location:
    4; 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (91227362..91260125, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (99224656..99257548, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene olfactory receptor 10J1-like Neighboring gene mucosal pentraxin Neighboring gene atypical chemokine receptor 1 (Duffy blood group) Neighboring gene uncharacterized LOC102163420 Neighboring gene thioredoxin, mitochondrial pseudogene Neighboring gene transfer RNA arginine (anticodon UCU)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      91227362..91260125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003481427.4XP_003481475.2  cell adhesion molecule 3 isoform X2

      Related
      ENSSSCP00000006838.3, ENSSSCT00000007028.3
      Conserved Domains (4) summary
      smart00294
      Location:352367
      4.1m; putative band 4.1 homologues' binding motif
      cd05882
      Location:30124
      Ig1_Necl-1; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))
      cd07705
      Location:145227
      Ig2_Necl-1; Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))
      pfam13927
      Location:230300
      Ig_3; Immunoglobulin domain
    2. XM_001929177.7XP_001929212.4  cell adhesion molecule 3 isoform X1

      Related
      ENSSSCP00000033904.1, ENSSSCT00000042275.1
      Conserved Domains (4) summary
      smart00294
      Location:386401
      4.1m; putative band 4.1 homologues' binding motif
      cd05882
      Location:64158
      Ig1_Necl-1; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))
      cd07705
      Location:179261
      Ig2_Necl-1; Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))
      pfam13927
      Location:264334
      Ig_3; Immunoglobulin domain
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