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    MEF2D myocyte enhancer factor 2D [ Sus scrofa (pig) ]

    Gene ID: 100156714, updated on 2-Oct-2018

    Summary

    Gene symbol
    MEF2D
    Gene description
    myocyte enhancer factor 2D
    See related
    Ensembl:ENSSSCG00000006482
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in psoas major muscle (RPKM 24.2), heart (RPKM 22.9) and 8 other tissues See more
    Orthologs

    Genomic context

    See MEF2D in Genome Data Viewer
    Location:
    4; 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (93581563..93616980)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (102218116..102236160)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene IQ motif containing GTPase activating protein 3 Neighboring gene tetratricopeptide repeat domain 24 Neighboring gene uncharacterized LOC106510129 Neighboring gene uncharacterized LOC102167529 Neighboring gene uncharacterized LOC106510131 Neighboring gene microRNA 9-1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Apelin signaling pathway, organism-specific biosystem (from KEGG)
      Apelin signaling pathway, organism-specific biosystemApelin is an endogenous peptide capable of binding the apelin receptor (APJ), which was originally described as an orphan G-protein-coupled receptor. Apelin and APJ are widely expressed in various ti...
    • cGMP-PKG signaling pathway, organism-specific biosystem (from KEGG)
      cGMP-PKG signaling pathway, organism-specific biosystemCyclic GMP (cGMP) is the intracellular second messenger that mediates the action of nitric oxide (NO) and natriuretic peptides (NPs), regulating a broad array of physiologic processes. The elevated i...
    • cGMP-PKG signaling pathway, conserved biosystem (from KEGG)
      cGMP-PKG signaling pathway, conserved biosystemCyclic GMP (cGMP) is the intracellular second messenger that mediates the action of nitric oxide (NO) and natriuretic peptides (NPs), regulating a broad array of physiologic processes. The elevated i...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    myocyte-specific enhancer factor 2D

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      93581563..93616980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021089672.1XP_020945331.1  myocyte-specific enhancer factor 2D isoform X1

      Conserved Domains (2) summary
      cd00265
      Location:278
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:161216
      HJURP_C; Holliday junction regulator protein family C-terminal repeat
    2. XM_021089675.1XP_020945334.1  myocyte-specific enhancer factor 2D isoform X3

      Related
      ENSSSCP00000046744.1, ENSSSCT00000038518.1
      Conserved Domains (2) summary
      cd00265
      Location:278
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:96151
      HJURP_C; Holliday junction regulator protein family C-terminal repeat
    3. XM_021089678.1XP_020945337.1  myocyte-specific enhancer factor 2D isoform X5

      Conserved Domains (2) summary
      cd00265
      Location:278
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:96151
      HJURP_C; Holliday junction regulator protein family C-terminal repeat
    4. XM_021089674.1XP_020945333.1  myocyte-specific enhancer factor 2D isoform X2

      Related
      ENSSSCP00000056808.1, ENSSSCT00000065772.1
      Conserved Domains (2) summary
      cd00265
      Location:278
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:97152
      HJURP_C; Holliday junction regulator protein family C-terminal repeat
    5. XM_021089677.1XP_020945336.1  myocyte-specific enhancer factor 2D isoform X4

      Related
      ENSSSCP00000006908.3, ENSSSCT00000007100.3
      Conserved Domains (2) summary
      cd00265
      Location:278
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:97152
      HJURP_C; Holliday junction regulator protein family C-terminal repeat
    6. XM_021089673.1XP_020945332.1  myocyte-specific enhancer factor 2D isoform X1

      Conserved Domains (2) summary
      cd00265
      Location:278
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:161216
      HJURP_C; Holliday junction regulator protein family C-terminal repeat
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