Format

Send to:

Choose Destination
    • Showing Current items.

    TRIM38 tripartite motif containing 38 [ Sus scrofa (pig) ]

    Gene ID: 100154512, updated on 13-Nov-2017

    Summary

    Gene symbol
    TRIM38
    Gene description
    tripartite motif containing 38
    See related
    Ensembl:ENSSSCG00000035153
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in spleen (RPKM 48.9), lung (RPKM 18.8) and 6 other tissues See more
    Orthologs

    Genomic context

    See TRIM38 in Genome Data Viewer
    Location:
    7; 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (20682536..20694340)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 3 Neighboring gene solute carrier family 17 member 2 Neighboring gene uncharacterized LOC110261475 Neighboring gene histone H1.1 Neighboring gene histone H3.1t-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_010449.5 Chromosome 7 Reference Sscrofa11.1 Primary Assembly

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase TRIM38

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      20682536..20694340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021098422.1XP_020954081.1  E3 ubiquitin-protein ligase TRIM38

      Related
      ENSSSCP00000048509.1, ENSSSCT00000038233.1
      Conserved Domains (4) summary
      smart00336
      Location:88129
      BBOX; B-Box-type zinc finger
      cd15815
      Location:280461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd16600
      Location:1363
      RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins
      cl25732
      Location:137270
      SMC_N; RecF/RecN/SMC N terminal domain
    2. XM_021098423.1XP_020954082.1  E3 ubiquitin-protein ligase TRIM38

      Related
      ENSSSCP00000058403.1, ENSSSCT00000062115.1
      Conserved Domains (4) summary
      smart00336
      Location:88129
      BBOX; B-Box-type zinc finger
      cd15815
      Location:280461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd16600
      Location:1363
      RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins
      cl25732
      Location:137270
      SMC_N; RecF/RecN/SMC N terminal domain
    Support Center