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    CCT3 chaperonin containing TCP1 subunit 3 [ Sus scrofa (pig) ]

    Gene ID: 100154317, updated on 2-Oct-2018

    Summary

    Gene symbol
    CCT3
    Gene description
    chaperonin containing TCP1 subunit 3
    See related
    Ensembl:ENSSSCG00000006487
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Also known as
    CCTG
    Expression
    Ubiquitous expression in ovary (RPKM 147.0), heart (RPKM 84.1) and 8 other tissues See more
    Orthologs

    Genomic context

    See CCT3 in Genome Data Viewer
    Location:
    4; 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (93733967..93753340)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (102435570..102453406)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106510131 Neighboring gene microRNA 9-1 Neighboring gene Rh family B glycoprotein Neighboring gene TSSK6 activating cochaperone Neighboring gene transmembrane protein 79 Neighboring gene glycosylated lysosomal membrane protein Neighboring gene SMG5, nonsense mediated mRNA decay factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    chaperonin-containing T-complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    T-complex protein 1 subunit gamma
    Names
    CCT-gamma
    TCP-1-gamma
    matricin

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001244180.1NP_001231109.1  T-complex protein 1 subunit gamma

      Status: PROVISIONAL

      Source sequence(s)
      AK238740
      UniProtKB/TrEMBL
      A0A287AMZ2
      Related
      ENSSSCP00000045371.1, ENSSSCT00000045139.1
      Conserved Domains (2) summary
      cd03337
      Location:6525
      TCP1_gamma; TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
      TIGR02344
      Location:6529
      chap_CCT_gamma; T-complex protein 1, gamma subunit

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      93733967..93753340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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