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    PRDM1 PR/SET domain 1 [ Sus scrofa (pig) ]

    Gene ID: 100154284, updated on 2-Oct-2018

    Summary

    Gene symbol
    PRDM1
    Gene description
    PR/SET domain 1
    See related
    Ensembl:ENSSSCG00000004369
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in spleen (RPKM 3.4), lung (RPKM 2.2) and 7 other tissues See more
    Orthologs

    Genomic context

    See PRDM1 in Genome Data Viewer
    Location:
    1; 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (72309096..72335474)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (81574968..81601267)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L6 pseudogene Neighboring gene uncharacterized LOC106507207 Neighboring gene autophagy related 5 Neighboring gene uncharacterized LOC110259431 Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene reticulon 4 interacting protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    PR domain zinc finger protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      72309096..72335474
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005659341.3XP_005659398.1  PR domain zinc finger protein 1 isoform X4

      See identical proteins and their annotated locations for XP_005659398.1

      UniProtKB/TrEMBL
      A0A287BLU1
      Conserved Domains (3) summary
      smart00317
      Location:50170
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:538656
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:545565
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_021090455.1XP_020946114.1  PR domain zinc finger protein 1 isoform X5

      Related
      ENSSSCP00000056637.1, ENSSSCT00000038421.1
      Conserved Domains (3) summary
      smart00317
      Location:86206
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      sd00017
      Location:595614
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:606631
      zf-H2C2_2; Zinc-finger double domain
    3. XM_001925350.4XP_001925385.1  PR domain zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      F1RYP9
      Related
      ENSSSCP00000004716.2, ENSSSCT00000004830.3
      Conserved Domains (5) summary
      smart00317
      Location:86206
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:574692
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:581601
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:579601
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:621646
      zf-H2C2_2; Zinc-finger double domain
    4. XM_021090447.1XP_020946106.1  PR domain zinc finger protein 1 isoform X4

      Conserved Domains (3) summary
      smart00317
      Location:50170
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:538656
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:545565
      ZF_C2H2; C2H2 Zn finger [structural motif]
    5. XM_013992732.2XP_013848186.1  PR domain zinc finger protein 1 isoform X3

      Conserved Domains (3) summary
      smart00317
      Location:100220
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      sd00017
      Location:609628
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:620645
      zf-H2C2_2; Zinc-finger double domain
    6. XM_005659340.3XP_005659397.1  PR domain zinc finger protein 1 isoform X1

      Conserved Domains (5) summary
      smart00317
      Location:100220
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:588706
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:595615
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:593615
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:635660
      zf-H2C2_2; Zinc-finger double domain
    7. XM_005659342.3XP_005659399.1  PR domain zinc finger protein 1 isoform X4

      See identical proteins and their annotated locations for XP_005659399.1

      UniProtKB/TrEMBL
      A0A287BLU1
      Related
      ENSSSCP00000057386.1, ENSSSCT00000037769.1
      Conserved Domains (3) summary
      smart00317
      Location:50170
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:538656
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:545565
      ZF_C2H2; C2H2 Zn finger [structural motif]
    8. XM_021090461.1XP_020946120.1  PR domain zinc finger protein 1 isoform X6

      Related
      ENSSSCP00000049758.1, ENSSSCT00000053050.1
      Conserved Domains (4) summary
      smart00317
      Location:572
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:440558
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:447467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:487512
      zf-H2C2_2; Zinc-finger double domain
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