Format

Send to:

Choose Destination
    • Showing Current items.

    DNAJC3 DnaJ heat shock protein family (Hsp40) member C3 [ Sus scrofa (pig) ]

    Gene ID: 100154166, updated on 2-Oct-2018

    Summary

    Gene symbol
    DNAJC3
    Gene description
    DnaJ heat shock protein family (Hsp40) member C3
    See related
    Ensembl:ENSSSCG00000026082
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Also known as
    P58IPK
    Expression
    Ubiquitous expression in liver (RPKM 49.8), lung (RPKM 36.1) and 8 other tissues See more
    Orthologs

    Genomic context

    See DNAJC3 in Genome Data Viewer
    Location:
    11; 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (65230145..65299084)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (72092332..72161773)

    Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene claudin 10 Neighboring gene DAZ interacting zinc finger protein 1 Neighboring gene uncharacterized LOC106507943 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene progesterone receptor-like Neighboring gene heparan sulfate 6-O-sulfotransferase 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Immune System, organism-specific biosystem (from REACTOME)
      Immune System, organism-specific biosystemcomputationally inferred pathway (not manually curated)
    • Influenza A, organism-specific biosystem (from KEGG)
      Influenza A, organism-specific biosystemInfluenza is a contagious respiratory disease caused by influenza virus infection. Influenza A virus is responsible for both annual seasonal epidemics and periodic worldwide pandemics. Novel strains ...
    • Influenza A, conserved biosystem (from KEGG)
      Influenza A, conserved biosystemInfluenza is a contagious respiratory disease caused by influenza virus infection. Influenza A virus is responsible for both annual seasonal epidemics and periodic worldwide pandemics. Novel strains ...
    • Innate Immune System, organism-specific biosystem (from REACTOME)
      Innate Immune System, organism-specific biosystemcomputationally inferred pathway (not manually curated)
    • Neutrophil degranulation, organism-specific biosystem (from REACTOME)
      Neutrophil degranulation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
    • Protein processing in endoplasmic reticulum, organism-specific biosystem (from KEGG)
      Protein processing in endoplasmic reticulum, organism-specific biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...
    • Protein processing in endoplasmic reticulum, conserved biosystem (from KEGG)
      Protein processing in endoplasmic reticulum, conserved biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 3
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001190184.1NP_001177113.1  dnaJ homolog subfamily C member 3 precursor

      Status: PROVISIONAL

      Source sequence(s)
      AK237243
      Related
      ENSSSCP00000021430.2, ENSSSCT00000026790.2
      Conserved Domains (6) summary
      COG0484
      Location:392459
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      sd00006
      Location:3765
      TPR; TPR repeat [structural motif]
      pfam00226
      Location:394459
      DnaJ; DnaJ domain
      pfam00515
      Location:107137
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:36100
      TPR_11; TPR repeat
      pfam14559
      Location:318382
      TPR_19; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

      Range
      65230145..65299084
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center