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    SMAD9 SMAD family member 9 [ Sus scrofa (pig) ]

    Gene ID: 100153584, updated on 2-Oct-2018

    Summary

    Gene symbol
    SMAD9
    Gene description
    SMAD family member 9
    See related
    Ensembl:ENSSSCG00000009357
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in lung (RPKM 12.4), ovary (RPKM 6.3) and 5 other tissues See more
    Orthologs

    Genomic context

    See SMAD9 in Genome Data Viewer
    Location:
    11; 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (12705652..12727981, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (12653062..12675499, complement)

    Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene regulatory factor X associated protein Neighboring gene uncharacterized LOC110255804 Neighboring gene ALG5, dolichyl-phosphate beta-glucosyltransferase Neighboring gene exosome component 8 Neighboring gene SPT20 homolog, SAGA complex component

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General protein information

    Preferred Names
    mothers against decapentaplegic homolog 9

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195510.1NP_001182439.1  mothers against decapentaplegic homolog 9

      See identical proteins and their annotated locations for NP_001182439.1

      Status: PROVISIONAL

      Source sequence(s)
      HQ148186
      UniProtKB/TrEMBL
      E1B2C7
      Related
      ENSSSCP00000009987.2, ENSSSCT00000010254.3
      Conserved Domains (2) summary
      cd10490
      Location:13136
      MH1_SMAD_1_5_9; N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8)
      cl00056
      Location:230430
      MH2; C-terminal Mad Homology 2 (MH2) domain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

      Range
      12705652..12727981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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