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    ikzf1 IKAROS family zinc finger 1 [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 100136762, updated on 27-Jan-2018

    Summary

    Gene symbol
    ikzf1
    Gene description
    IKAROS family zinc finger 1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Also known as
    ikaros
    Orthologs

    Genomic context

    See ikzf1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Omyk_1.0 (GCF_002163495.1) 23 NC_035099.1 (3178928..3202418)

    Chromosome 23 - NC_035099.1Genomic Context describing neighboring genes Neighboring gene brorin-like Neighboring gene spermatogenesis associated 48 Neighboring gene fidgetin like 1 Neighboring gene uncharacterized LOC110502293

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_035099.1 Chromosome 23 Reference Omyk_1.0 Primary Assembly

    General protein information

    Preferred Names
    DNA-binding protein Ikaros
    Names
    Ikaros homolog
    ikaros family zinc finger protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001124712.1NP_001118184.1  DNA-binding protein Ikaros

      See identical proteins and their annotated locations for NP_001118184.1

      Status: PROVISIONAL

      Source sequence(s)
      U92201
      UniProtKB/Swiss-Prot
      O13089
      Conserved Domains (3) summary
      COG5048
      Location:152226
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:127147
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:140164
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Omyk_1.0 Primary Assembly

    Genomic

    1. NC_035099.1 Reference Omyk_1.0 Primary Assembly

      Range
      3178928..3202418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021580067.1XP_021435742.1  DNA-binding protein Ikaros isoform X2

      Conserved Domains (3) summary
      COG5048
      Location:205279
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:180200
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:193217
      zf-H2C2_2; Zinc-finger double domain
    2. XM_021580066.1XP_021435741.1  DNA-binding protein Ikaros isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:205279
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:180200
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:193217
      zf-H2C2_2; Zinc-finger double domain
    3. XM_021580068.1XP_021435743.1  DNA-binding protein Ikaros isoform X3

      Conserved Domains (3) summary
      COG5048
      Location:204415
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:180200
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:193217
      zf-H2C2_2; Zinc-finger double domain
    4. XM_021580069.1XP_021435744.1  DNA-binding protein Ikaros isoform X4

      Conserved Domains (2) summary
      COG5048
      Location:70185
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:114134
      ZF_C2H2; C2H2 Zn finger [structural motif]
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