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    cd3z CD3zeta-2 [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100136514, updated on 12-Mar-2017

    Summary

    Gene symbol
    cd3z
    Gene description
    CD3zeta-2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Annotation information
    Annotation category: partial on reference assembly

    Genomic context

    See cd3z in Genome Data Viewer
    Location:
    chromosome: ssa17
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ICSASG_v2 (GCF_000233375.1) ssa17 NC_027316.1 (24542878..24543114, complement)

    Chromosome ssa17 - NC_027316.1Genomic Context describing neighboring genes Neighboring gene phospholipid scramblase 1 pseudogene Neighboring gene serine/threonine-protein kinase SIK2-like Neighboring gene alpha-crystallin A chain-like Neighboring gene cellular repressor of E1A-stimulated genes 1 Neighboring gene histone-lysine N-methyltransferase SETDB2-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_027316.1 Chromosome ssa17 Reference ICSASG_v2 Primary Assembly

    General protein information

    Preferred Names
    CD3zeta-2
    Names
    T-cell surface glycoprotein CD3 zeta chain

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001123620.1NP_001117092.1  CD3zeta-2 precursor

      See identical proteins and their annotated locations for NP_001117092.1

      Status: PROVISIONAL

      Source sequence(s)
      EF421413
      UniProtKB/TrEMBL
      A3RK65
      Conserved Domains (2) summary
      pfam04684
      Location:80141
      BAF1_ABF1; BAF1 / ABF1 chromatin reorganizing factor
      pfam11628
      Location:2858
      TCR_zetazeta; T-cell surface glycoprotein CD3 zeta chain

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ICSASG_v2 Primary Assembly

    Genomic

    1. NC_027316.1 Reference ICSASG_v2 Primary Assembly

      Range
      24542878..24543114 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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